Nfab002287.1
Basic Information
- Insect
- Nomada fabriciana
- Gene Symbol
- -
- Assembly
- GCA_907165295.1
- Location
- OU015693.1:2822285-2824614[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00015 0.014 15.9 4.7 1 23 293 315 293 315 0.97 2 12 8.8e-05 0.0085 16.6 2.2 1 23 319 341 319 341 0.98 3 12 0.00077 0.075 13.7 1.9 3 23 348 368 346 368 0.95 4 12 0.00022 0.021 15.4 3.5 1 23 420 442 420 442 0.98 5 12 0.0007 0.067 13.8 1.4 1 23 447 469 447 469 0.97 6 12 0.00025 0.024 15.2 2.3 1 23 518 540 518 540 0.98 7 12 1.8e-05 0.0017 18.8 0.4 2 23 548 569 547 569 0.97 8 12 8.7e-07 8.4e-05 22.9 2.1 1 23 579 601 579 601 0.96 9 12 0.0002 0.019 15.5 1.6 1 23 607 629 607 629 0.97 10 12 0.00014 0.014 16.0 0.7 1 23 635 657 635 657 0.98 11 12 4.2e-06 0.0004 20.8 2.0 1 23 663 685 663 685 0.96 12 12 7.5e-05 0.0072 16.9 0.3 1 22 691 712 691 712 0.96
Sequence Information
- Coding Sequence
- ATGACGGAATATTTTGATTTACCCCTTAATATGGATAGAATCTGCAGGATTTGCCTTACAGAGGGTACTAGCTTAACTTCTATTTTTTGTCCGACTCAAGAAATGAATGATTTTTCGGGTCTTCCACAAAGAATACAAGTTTGTGGATCGATAGAGATTCACGAACAAGACGGACTACCCTCGTCCATTTGTGATATTTGTATTTATAAAGCAAGCGTGGCACATGAATTTAGACAACAATGTCAACATTCTGATGCCAAATTACGAATGTATTATAATAAACCAACTAAAACTACAATTGTGGATACGTACACACAGACAGAGTCTGAGATAAGAACATTATTGCCAAAAGAGCATGTTGATGAAGAGGACTATTTTGTAAAGGAAGAGATGCAAGCTGCATCAAACTCCCAAGAATATATACAAACTAATAATTCATATTGTAGAGATGAGTCTAGTTTAAGTTCTAGCCAGATGGATATACAAGATGAGAAGCTTTTTATTTGTTCTATTGGATTCGAAGGACCTAAAGAAATTGAAAAGGAACCTTGTGCGTCAGAAAGTACTATACATGAGGCATCTCTCGCACAAGGAGTGACCAATGATATCGTTGAAACTATACCTATAGAAACTAAGCCAGGGGAAAGTCAAAATATTAACCATGATATGGAAGTAGATGACAAAAAGCAGCAGCAGGAATTTCTTAATCAGAATATATTAAATGACAATGATAATAAAGAGGAAAATGGAATTTTACCGAAACGTACTTCCACCAGGAAAGTAAAATTAGTGCCTATTAAAATTTATAGTGAAGATGAGGTCGATGATACTTACTATGATTCAAGCAATGACAGCCAAGATTCCAGGGAATCAAAATTTAAATGCAAAGTATGTTCAAAGTGTTATAACACACAAAGAGGCTTAAAGAAACATTCCCTTGTTCATGAAAAAAAACACAAATGCAATATTTGTTCAAAAATGTTCTATGAATTAGAGAATATGGAGAATCATCAGAAAATACATGCATCGAAACCACTTGCGTGTCAATTGTGTCATGCGTGCTTTTCCAAGCCTCAAAGTCTTGTACGTCATTTAAATGCTCATACAGAAAAAGTGAACAATTTGATTAAACAAATTAGTACAGACAAAAAGAAAAGTAACAAGGAACCGAAGAAAGAAGTAACCCTTGATGATGACACAGATGATGAAAATGGTACTGTCAATGAAGTTTACGATTTCGAAAATGCACCTGAATTGTACAAATGTGAAATTTGTAGCCAGTACTGTTCTTCCCTAAAAAATCTAAAACGTCACACTCTTGTTCATGGAGATAAAAAGTATTCATGTACTGTGTGTAAAAAATGGTTCTTTAGACCTGATACATTGAAAAAGCATGCAGAGAAACACGGTCATGGATTATTGGATAACTTAGTAGATGATAATAAGTTTTTTGATTCTGACGATGATTCGCTCCCAAATACAGTGCAGAACACTCTGCAAGACAGTGAAAATGGTAAGAAGGAAGAAAGCGACGAAGATGGTTCTGGTGAATATAAATGTCAACATTGTGATAAAATTATGGCTACAAAAAAAGGTCTTAGACGTCACGTATCAATGCATAAACCAAAAGCTGAACCAGTTACTTGTGAAATCTGTGGGAAGGTATGCGCTAGTCAAGCCCGTCTTGTTCTTCATCAAAGGACGCATAAGCCAAAAGAGAAGGTTCCACGAGAATATTTGTGTCACATTTGTAGTAAAGTGTATCCGAGTAATTCCTCTCTAACGTATCACATGAGAACTCATACTGGCATTAAACCTCATGTGTGTAAAACTTGCAACAGTGGATTTACTACAACAACCAGTTTAGCAAATCACATCAGAATTCATACGGGCGATAAGCCATTTGTTTGTCACGTATGTAGCGCAGCGTTCGCTGTAAGTTCAGCTTTCAGACGTCACTTGACTCGACATACAGGAGAAGCAAATTATTTGTGCAAAACGTGCGGTAAAGCATTTAAAAGGCTAAGTACTTTAAAAGAACACACCTACACTCATTCTGGTGAAAAGCCTTATGTGTGTAAAACGTGCGGAGCTGCTTATAGTCATAGTGGTAGTTTGTTTGCACACCAGAAACGTTGTCGAGCACAGTATGGAGAGATGGTTGTAGAGGAACATCACCATGCGGTTACTCATCATATTCATGTAAATAATGTGCAATCCGCAGTACGGTCACTTGCTGTGATAGGACAAATGTTTTAA
- Protein Sequence
- MTEYFDLPLNMDRICRICLTEGTSLTSIFCPTQEMNDFSGLPQRIQVCGSIEIHEQDGLPSSICDICIYKASVAHEFRQQCQHSDAKLRMYYNKPTKTTIVDTYTQTESEIRTLLPKEHVDEEDYFVKEEMQAASNSQEYIQTNNSYCRDESSLSSSQMDIQDEKLFICSIGFEGPKEIEKEPCASESTIHEASLAQGVTNDIVETIPIETKPGESQNINHDMEVDDKKQQQEFLNQNILNDNDNKEENGILPKRTSTRKVKLVPIKIYSEDEVDDTYYDSSNDSQDSRESKFKCKVCSKCYNTQRGLKKHSLVHEKKHKCNICSKMFYELENMENHQKIHASKPLACQLCHACFSKPQSLVRHLNAHTEKVNNLIKQISTDKKKSNKEPKKEVTLDDDTDDENGTVNEVYDFENAPELYKCEICSQYCSSLKNLKRHTLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKFFDSDDDSLPNTVQNTLQDSENGKKEESDEDGSGEYKCQHCDKIMATKKGLRRHVSMHKPKAEPVTCEICGKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMVVEEHHHAVTHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00962662;
- 90% Identity
- iTF_01069826;
- 80% Identity
- -