Nfab007715.1
Basic Information
- Insect
- Nomada fabriciana
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_907165295.1
- Location
- OU015697.1:1563817-1567477[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 9.2e-07 8.9e-05 22.9 3.9 1 23 343 365 343 365 0.99 2 14 9.3e-07 8.9e-05 22.9 0.9 1 23 371 394 371 394 0.96 3 14 2e-06 0.00019 21.8 0.7 1 23 400 422 400 422 0.99 4 14 1.6e-05 0.0015 19.0 0.9 1 23 428 450 428 450 0.97 5 14 9.7e-05 0.0093 16.5 3.1 1 23 456 478 456 478 0.97 6 14 0.00086 0.083 13.5 2.0 1 20 562 581 562 581 0.97 7 14 0.00025 0.024 15.2 0.9 1 23 626 649 626 649 0.96 8 14 6.5e-05 0.0063 17.0 1.2 1 23 681 703 681 703 0.98 9 14 1e-05 0.001 19.6 1.5 1 23 709 732 709 732 0.96 10 14 1.6e-05 0.0016 18.9 0.3 1 23 738 760 738 760 0.98 11 14 1.9e-07 1.8e-05 25.0 1.0 1 23 766 788 766 788 0.98 12 14 5.7e-06 0.00055 20.4 1.6 1 23 794 816 794 816 0.98 13 14 0.0001 0.0097 16.4 1.0 1 23 822 844 822 844 0.96 14 14 2e-05 0.0019 18.7 2.3 2 23 851 873 850 873 0.97
Sequence Information
- Coding Sequence
- ATGGAATCTGAAAGTTCTGTTATGTTAGAATCATGCGAAGAGGATTCAATTTTGATTGAAACAGTGAAAAACATGGTAAATGAAAATACAACCGCTGAATTGGAAAGCGAGGATGAAGGATATTTTGTGGTAACTGACGTTCAAGATGAACAACAAAATGAGATTGAGGTGTTAAACGAGGAATCAACGATAACACAATCCGTAGAACAATTTTCTTGGTCCAATTTATGTAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTGTAATAAAATACATAAGTATCTACCAATACATGTGTCCGAAAACGATACGCTTCCCTTGCAATTATGTTACCACTGTGCCGCAACGATACTTGCGTGGCACGAATTGTTGGACGGATGCTTAAATGCTGAGCGAAGGTTGTTAGAAATACAAAGTGCTTTACAAGAAAAACAGGAATCGGAGGAATTAGAAACTTCCACGGAGGATACTATAAATGTATCTAACGTGACAGAACCCCTTCAACAAGAGCAGGAAAAGGTAAAGGATGAAGTTTGCAAGGAATCAACCGTTATTGATTCGGACAGGTCCAGTAATAGCCGAACACCATTTAAGGTGTTCCTAGACATGCAGAATGTATTTCGGAAGCAACACAGAAAAAAGCACCAGCGACAAGAAAGAGAATCTGCAGACAATGGACATTGCGATTCCGTCTGGATCACTGTTATGAATTCGACGACGCTTAATCAACCTACCATAATATCTCATCAGCTACAAAACAGCAATATTGATATAAAAGAAGAGGAGGTTGTACAAATGTATAAAACAAATAGCTTAGAAAAACTAAAACCGGAGGATGAAACGAATACACCAACAAGTCCATCGAACACGAAAAATGGAAATAAGAAATCCAGAGGGAGATGCAAAATTTGTTCCACCGATACAAAAGATCCGAAAGATCCTTGCGAACACGTTAAAAGCAAAGCTGTCATCGATGTACAGGCATCTTATCAATGCGTCGAGTGTGGAAAATGTTTCAAACTGAAAGACTCCTATTTTAGACACATGAGGATACATACAGACGAAAGACCATTTACTTGTCACGTATGCGGAAAACAATTTCGGGACTCTGGCGGCCTTTCGAGGCACATCAAAGATGTGCATGCAAAATTGAAGAATTTTACTTGCGATATATGCGGCAAATCTTTCGCATCGAAAGCTACCAGAGAAGATCATCGTAGAACGCATACAGGAGAAAGGCCTTACGTGTGCGACTCGTGCGGAAAGACGTTTAAATCGAAAGCATCCTTGTATATTCATAGTAAATTGCACACGGATGAATTTCCACATCCGTGCACATATTGCAACAAGAAGTTTCGTAGAAGACAAGAAATGCTGGCTCATGTGACTACTCACACGGGAGAAAAGAATTACGGTTGCGATGTGTTTGGTCTGCCTCGGAAGAAATCCTACACGCCATACTGCTCGTTGCAACAAGCATTCAGTAATGCAAATACTAAAGAAAGCATACAGACAAAAACTGCTGACAGTAACGATCCCGATAATTCGTTCGACAATTGTTCTGACACAGATTTGAATACAGCAGAAATTCCGGAAGAATTGTTACCATCCGTAAATGAGGCAACTAGCTCGTCGAAAAATCAATACACGTGCAATAACTGTAGGCGTAACTTTAAAAAACAGTATTATTTAACGCTGCACATACCAAAATGCAAAAGTAATATCAACGGAGAAATTATATCGGACGCGAGCAAACGGAAAAATGAAATGTTGAAGAATAAAGATCGAAGAAATTGGAAATCGTTTCACAGGTGTGAAAAAGAAAGATTCGAAACATACCCCTGCATGTATTGTGATTACAAGGTGAAACAGAGAAAGCTGCTTAAGGTACATTTAAGAGAATCGCATCCAGATTCCATCAGGAAGAAAGTTAAAAAATTAAAATGCGCCGATAGAGGTACGGTGTTGCGCGCAAAAATGGAAGTCGATGGAAAGGTTTATTATCATTGCAACGAGTGCGGTAAAAACCTTTATTCACCGTACACCTTTCTCTGGCATATACGAATACATACCGGTGAACGGCCTTACACTTGCCATCTGTGCGGAAAGCAATTCCGAGTGAACCAAGGTTTAGCTAGACATTTGCGAGACACGCATGCAGGGATTAAGAATTTCCCGTGCGATATCTGTGGACAAACGTTTTCAACTAAACGTAGCGCAGAAGACCATAAGCGTATTCATACTGGTGAACGACCTTACATTTGTAATGTCTGCGGAAAATCATTTAAACAAAAAGCTTCTTTATTCGTACATAATCGTACACACTCAGACGTGTTCCCTTTTAAATGTAACTACTGCGATCAAAACTTTCGAACGAGGCCATCACTAATGGTGCACATAACTAAACACACAGGTGAAAAGCCACATGCATGCGACATATGCGGCCGAGGCTTTCGTATAAAGTACGAGATGAAGCGTCACCGTTTAATACATTTCGATGAAAAACCATGGAAATGTACAGAATGCAATCTCTCATTTCGGCAGAAACGCTATTTAGTTAATCATAGAAAAACTAATCATAACGCAGCTCCGTTCGTGGGCGTCGTGAAGTAA
- Protein Sequence
- MESESSVMLESCEEDSILIETVKNMVNENTTAELESEDEGYFVVTDVQDEQQNEIEVLNEESTITQSVEQFSWSNLCRXXXXXXXXXXXXXXXXXXXXXLCNKIHKYLPIHVSENDTLPLQLCYHCAATILAWHELLDGCLNAERRLLEIQSALQEKQESEELETSTEDTINVSNVTEPLQQEQEKVKDEVCKESTVIDSDRSSNSRTPFKVFLDMQNVFRKQHRKKHQRQERESADNGHCDSVWITVMNSTTLNQPTIISHQLQNSNIDIKEEEVVQMYKTNSLEKLKPEDETNTPTSPSNTKNGNKKSRGRCKICSTDTKDPKDPCEHVKSKAVIDVQASYQCVECGKCFKLKDSYFRHMRIHTDERPFTCHVCGKQFRDSGGLSRHIKDVHAKLKNFTCDICGKSFASKATREDHRRTHTGERPYVCDSCGKTFKSKASLYIHSKLHTDEFPHPCTYCNKKFRRRQEMLAHVTTHTGEKNYGCDVFGLPRKKSYTPYCSLQQAFSNANTKESIQTKTADSNDPDNSFDNCSDTDLNTAEIPEELLPSVNEATSSSKNQYTCNNCRRNFKKQYYLTLHIPKCKSNINGEIISDASKRKNEMLKNKDRRNWKSFHRCEKERFETYPCMYCDYKVKQRKLLKVHLRESHPDSIRKKVKKLKCADRGTVLRAKMEVDGKVYYHCNECGKNLYSPYTFLWHIRIHTGERPYTCHLCGKQFRVNQGLARHLRDTHAGIKNFPCDICGQTFSTKRSAEDHKRIHTGERPYICNVCGKSFKQKASLFVHNRTHSDVFPFKCNYCDQNFRTRPSLMVHITKHTGEKPHACDICGRGFRIKYEMKRHRLIHFDEKPWKCTECNLSFRQKRYLVNHRKTNHNAAPFVGVVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -