Nfab018445.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nomada fabriciana
Gene Symbol
-
Assembly
GCA_907165295.1
Location
OU015698.1:802779-805197[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 6.9e-06 0.00066 20.1 3.3 2 23 281 302 280 302 0.97
2 15 0.00072 0.07 13.8 3.9 1 23 308 331 308 331 0.97
3 15 1.4e-05 0.0014 19.1 1.1 3 23 411 431 409 431 0.97
4 15 2.7e-06 0.00026 21.4 1.8 1 23 437 459 437 459 0.98
5 15 0.00062 0.06 14.0 0.2 1 23 465 487 465 487 0.97
6 15 2.3e-07 2.2e-05 24.8 0.9 1 23 502 524 502 524 0.98
7 15 2.4e-06 0.00023 21.6 0.5 1 23 530 552 530 552 0.97
8 15 7.4e-06 0.00071 20.0 2.3 1 23 558 580 558 580 0.98
9 15 0.00065 0.063 13.9 0.2 1 23 586 608 586 608 0.99
10 15 2.9e-06 0.00028 21.3 0.3 1 23 614 637 614 637 0.94
11 15 1.5e-05 0.0014 19.1 1.3 1 23 643 665 643 665 0.98
12 15 0.00032 0.031 14.9 4.7 1 23 671 693 671 693 0.98
13 15 3.3e-06 0.00032 21.1 0.2 1 23 699 722 699 722 0.96
14 15 0.00031 0.03 14.9 0.3 1 23 728 750 728 750 0.94
15 15 2.9e-06 0.00028 21.3 4.5 1 23 756 778 756 778 0.99

Sequence Information

Coding Sequence
ATGAATTCATATAACAATTGTGGAAAGGAAAGATTGTATCATAGAGGACAAATTGATGTAATTGATATGCCAGTACAGTTAAATTGTAATTACAAATATTTTTTTGTTTACGAGGATCAAGTATCCAGATTTGTTGTATTGAAAGGTTTACATGGGAATGCAGCAAGTGAAGTAGCTATCAAACTCTTAGACGTGTTAGCTATTATTGGAGCCCCACAGGTTTTACAAAGTAGTAACGGGCGTGGGTTCGCGGAAGAGGTTGTACAGGAATTACGTTTTTTATGGAAAGATTACGTTATACTTCACGGTGAAATCTCTGAAAGTGAGAAGAGTAGAGATTTTAAAAATTTACTTGAACGTTGGATAGAAATGAATCCAAACACAACATGGTATGAAGCATTGAAACATATACAAATTTTCCAAAATTCAACCTTTCGTTGCGATAATGGAAGGATTCCGTACGAGATATTGTTTGGTAAAAATATTCACGAAGAATTTCAAAAACGAAGTAACAGTATAGATTCAAAAGACAACATATGGAAAGAAGAAGAATGGATTAGTCTTATGCCCAATAATACGAGCAAGTCTAAAGAAAAAGGTGGTGAACACCTTACAAAGGACTCAACCAATTTGACAGATGTAAGGGATTTGGTCTGTCCAAAAGAATACGAGAGTGACTCTTCGACCGAAGATAGAGACGAGGTGCAAACAGATACCCCAGATTTTAAATTTGTGAATGTAAAAAGTGAACCTTTAAACGTGCATACAGAAGATTCAGTATTTGAGGATGAATCGATGATAGTGGATAAAACATTGTCCATAGAAGACCTAACTGACTTAAAGTGCAAAGTCTGCAATAAACAGTACATGAAACCTGGGCATTTAAAAAATCATATGAGGACGCACACAAGGGGAAAGAAATTTGAGTGTAAATTATGCAACAAAACGTTTCATGTTCTAAGCTTGTATGAAAAGCACACCCGTCAATCTCACCGTCAAAATAAATTATCTAGCTTGAGTAGAAAAAGGAAAAATAAAGACTCACAAGATGAAACGACGGTAGATGCAAAAGCAGTTAAATTAAGTTCTTCGTCGGATTTCAATCATGACGATACACAATCAAATGTAGACGACAACAGTCCAAAAGCGAAAAGGAGTCTTATTAAAGAACGAAAAAAAGTAACTGCCGACAATCGTTCAATGAAACTAAATGGAGATTCAACTCTAGATTGTTCGTACTGCAACCAAAAGTTTAACTTTCCTAGTGTTTTAAAAAGGCATATTCGATCGCACACAAACGAAAGGCCATACGTCTGTGAAATTTGTAATAAAAGTTTCAAACAACTGGGCCATCTTAGTCAACATTCATTGACGCACAAGGATTGTCGTTCATTCCATTGTGCAGTGTGTGGAGTAAAGTTTGACACATTGGGTGCTCTAAAAGTCCACGCTCAGTCACATAAAGAGGATTACATCTCCAAAAGTAAAGCTGCATTCCGTCTATTCGAATGTGACAATTGTAAAAAGGTATTCACCACTAAAAGCGTTTTGGAACGGCACATACTCACTCATTCCCACGAACGTCAATTCGCATGCGTAATTTGTGGGAAGAGATTCAAGCAAGCTGGACACGTAAAATCTCATATGCTTGTGCATACTGGTGAACGAAAATTTGAGTGCACGGTCTGCAAGAAAAGATTTAGCCTATCGAATTCTTTGAAAAAGCATATGTACGTCCATAATGGACAAAAGCCGTATCAATGCGATGTATGCGGGGCACGGTTTCTAGAAAAGAGAAATCTAAATGGACATCTCATGACTCACACGAATGAACGTCCGTTTCGCTGTAAGATTTGTGGCAAACGATATACTTTAGCGGATACTTTACGCCGGCATATAAGTGCTGCGCACGAAGATGGGCGTACGTATCAATGCGAAATTTGTGCGAAGATGTTCAAACAGCTTGCCCATCTATCTGTACACAAGAAAGTACATAATGATGAGCGACCATTCCAATGTCATTTATGCGAAAAGAACTTCAAGCATAAGAACGTGCTTAAATCTCATTTGGCCATTCACGCAAATGTGAGGCCGTTTGAATGCGATGAATGCAAGGCTACATTTGTAAGAAAAACTAATTTGCAAACGCATATCGCATCCGCTCATATGAATGAAAGACCGTATGTTTGTATTATTTGTGGGAAACGATTTAAACAGATTAGCCACTTAAATGGACACGTCGTAGTGCACAGTAATTTAATGCCTTATCAGTGCGATTTCTGTGATCGGCGATGTAATCGGCTCGATAATTTGAAGAAACATATGCGTCTTCACACAAAAAATAAAGAATGA
Protein Sequence
MNSYNNCGKERLYHRGQIDVIDMPVQLNCNYKYFFVYEDQVSRFVVLKGLHGNAASEVAIKLLDVLAIIGAPQVLQSSNGRGFAEEVVQELRFLWKDYVILHGEISESEKSRDFKNLLERWIEMNPNTTWYEALKHIQIFQNSTFRCDNGRIPYEILFGKNIHEEFQKRSNSIDSKDNIWKEEEWISLMPNNTSKSKEKGGEHLTKDSTNLTDVRDLVCPKEYESDSSTEDRDEVQTDTPDFKFVNVKSEPLNVHTEDSVFEDESMIVDKTLSIEDLTDLKCKVCNKQYMKPGHLKNHMRTHTRGKKFECKLCNKTFHVLSLYEKHTRQSHRQNKLSSLSRKRKNKDSQDETTVDAKAVKLSSSSDFNHDDTQSNVDDNSPKAKRSLIKERKKVTADNRSMKLNGDSTLDCSYCNQKFNFPSVLKRHIRSHTNERPYVCEICNKSFKQLGHLSQHSLTHKDCRSFHCAVCGVKFDTLGALKVHAQSHKEDYISKSKAAFRLFECDNCKKVFTTKSVLERHILTHSHERQFACVICGKRFKQAGHVKSHMLVHTGERKFECTVCKKRFSLSNSLKKHMYVHNGQKPYQCDVCGARFLEKRNLNGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDECKATFVRKTNLQTHIASAHMNERPYVCIICGKRFKQISHLNGHVVVHSNLMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00684907;
90% Identity
iTF_01067748;
80% Identity
-