Nfab019061.1
Basic Information
- Insect
- Nomada fabriciana
- Gene Symbol
- -
- Assembly
- GCA_907165295.1
- Location
- OU015698.1:7047211-7054837[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.6e-05 0.0044 17.5 1.4 1 23 454 476 454 476 0.96 2 18 0.0027 0.26 11.9 1.6 1 20 482 501 482 504 0.94 3 18 1.1e-05 0.0011 19.4 1.4 1 23 510 532 510 532 0.98 4 18 6.6e-05 0.0064 17.0 4.4 1 21 538 558 538 560 0.95 5 18 9e-06 0.00086 19.8 5.6 1 23 566 588 566 588 0.99 6 18 2e-05 0.002 18.6 5.3 1 23 594 616 594 616 0.97 7 18 7.7e-05 0.0075 16.8 6.9 1 23 622 644 622 644 0.96 8 18 7.6e-08 7.3e-06 26.3 2.7 1 23 650 672 650 672 0.98 9 18 5.6e-05 0.0054 17.2 6.7 1 23 678 700 678 700 0.97 10 18 1.7e-05 0.0017 18.8 5.8 1 23 706 728 706 728 0.98 11 18 4.6e-07 4.5e-05 23.8 2.9 1 23 734 756 734 756 0.98 12 18 6.9e-06 0.00066 20.1 7.8 1 23 762 784 762 784 0.98 13 18 2.2e-05 0.0021 18.5 9.1 1 23 790 812 790 812 0.98 14 18 2.8e-05 0.0027 18.2 7.5 1 23 818 840 818 840 0.98 15 18 0.0014 0.13 12.9 8.8 1 21 846 866 846 868 0.94 16 18 1e-05 0.001 19.5 0.4 1 23 874 896 874 896 0.98 17 18 0.025 2.4 8.9 4.5 1 23 906 928 906 928 0.98 18 18 4e-07 3.9e-05 24.0 1.3 1 23 934 956 934 956 0.97
Sequence Information
- Coding Sequence
- ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCACAACAAGAGGATGTAAACGCGGGTCAAAGTGGTCGTCCTTCATACCCAGGTGGTTTGGCTACAGCAACCAGTCTTGGCAATGTAGGGAGTACCCCGCATTCATCCGCGGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGGTCCTCACGAATCTGTTTCCTGGACCGCTACCTCAGGTCTCGGTCTATCATCATTCCCACCACAACTCCTCACATAGGAGTAGTGGAGGTGGAGAGGCATCTTCCAAAGAACCAGCCTCTTCATTGAACCAAGAAATGGCGTTGACATCCAGTTCGCACCATCAGTCAACACCTACACACCATCATCATCAACCTTCAGTTAGCAGTAGCAGTCATCATAGTTCTTTACAACCAAATCCACAGCAGATACCAGTTTCTCTGCCAGGCCTTAATTTAGACGGAGCACACATACCTGCCAGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAATCAAAACGCACAGAGAGATGATAATAAAGTGAAAGACGAAGGTGGAAGTTGCACAACTGAACGTTGTAGTGACAATCAAGTTCACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCAAAACAATGCTGAAAAGCCTGAAAAGGAAAAAGAGCTGCGTCAACTAAACATGGCGCAATTCCAAGTACCCGATTTAAAACCAGGAGGTCATATGATGGATGTTAGAACGGCTGATGGTTCTGTTGTGAAAATCAGTGCTGGAAATGAGCAAGATTTAGCGAAGACCCTAGGTGTTGAAATGGTGCAAAATATGTATAAGGTTAATGTCGAGGACATTAATCAGCTTTTAGCATATCACGAAGTATTTGGGAAATTACAAAGTGAAATAGCAGCTGGTACAACCTTAGTTGGAAGTACAGTTCCTACTCAAACAGTTACCACAATACAAAATGGAACTCCAATTGTGCAACAAGTACAATTAAATAAGTTCGATATTAAATCGAGCGATGGTGAAGCAACACCGGGACCAAGTGCTTCGCCTGTGTCAGTTGGAAGTCATGCATGTGAAATATGTGGAAAAATTTTTCAGTTTCGTTATCAACTTATCGTACATCGTCGATATCACACGGAGAGAAAACCTTTTACTTGCCAGGTGTGTGGCAAAGCCTTCTTGAATGCCAATGATTTGACCCGACATGGGAAGTGTCATCTAGGTGGATCAATGTTTACCTGTACAGTTTGTTTTCATGTATTTGCAAATGCACCGTCTTTAGAACGTCACATGAAGCGACATGCTACCGATAAACCATACAATTGTACCGTTTGCGGAAAAAGCTTTGCAAGGAAGGAACATTTGGATAATCATACGCGTTGCCATACTGGAGAAACACCTTATAGGTGCCAGTATTGTTCGAAGACGTTTACGAGGAAAGAACATATGGTAAACCATGTTCGCAAACACACGGGCGAAACACCACATCGGTGCGATATTTGTAAAAAGAGCTTTACCCGCAAAGAACATTTTATGAACCATGTTATGTGGCACACGGGAGAAACTCCACATCATTGCCAGGCCTGTGGAAAAAAATATACACGTAAAGAACATCTCGCAAATCATATGCGTTCACATACCAATGATACACCGTTTCGCTGTGAAATATGCGGTAAGTCGTTTACGAGAAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGTGAGACGCCGCACCGCTGTGATTTCTGCTCGAAGACATTCACACGAAAGGAGCATCTTTTGAACCACGTTCGCCAGCACACGGGTGAGTCCCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGTGAGACCCCATTCCGCTGTCAGTACTGTCCAAAAGCATTTACGCGGAAAGATCATCTGGTGAACCATGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCCTTCACGAGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTACGAATCCACACCGGTGAATCACCTCACAGGTGTGAATTCTGCCAGAGAACGTTCACCAGGAAAGAACATCTAAATAATCATCTCCGTCAACATACCGGAGATTCGTCGCACTGTTGCAACGTTTGCTCGAAACCGTTTACAAGAAAAGAGCATCTTGTAAACCATATGCGATGTCATACTGGTGAACGTCCATTCGTATGCACAGAATGTGGCAAAAGTTTCCCATTGAAGGGCAATCTACTTTTCCACATGCGTTCGCACAATAAAGGTAGTAACGCTGAGAGACCGTTCCGTTGCGACCTTTGTCCAAAAGATTTCATGTGCAAGGGACACTTGGTGTCTCACAGACGATCTCATTCGGACGAACGACCGCACAGCTGTCCAGATTGCGGCAAAACATTTGTCGAGAAGGGCAATATGTTGAGACATTTGAGAAAACACGCGGCTGAAGGGCCTCCTACGCAAGTCAGCACACCGTCAGCCATTCCTCAGTCTGGTGTTCTGCCGATACCAGCGGCTGCAGTCCTAGTAGGCCATCCCCTGGCACCGCCTGCGCCGCCCGTAGTGCCGCAACACACGGTTGTTGTGCCTACTCCTCCGGGTGTATTGACCTCCTACTAA
- Protein Sequence
- MNSEQHALPATTQAQQEDVNAGQSGRPSYPGGLATATSLGNVGSTPHSSADLRVGTAVALASSVAKYWVLTNLFPGPLPQVSVYHHSHHNSSHRSSGGGEASSKEPASSLNQEMALTSSSHHQSTPTHHHHQPSVSSSSHHSSLQPNPQQIPVSLPGLNLDGAHIPASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNQNAQRDDNKVKDEGGSCTTERCSDNQVHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQNNAEKPEKEKELRQLNMAQFQVPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGSTVPTQTVTTIQNGTPIVQQVQLNKFDIKSSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFLNANDLTRHGKCHLGGSMFTCTVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCSKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQACGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQSGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLTSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01066407;
- 90% Identity
- -
- 80% Identity
- -