Nfab004896.1
Basic Information
- Insect
- Nomada fabriciana
- Gene Symbol
- -
- Assembly
- GCA_907165295.1
- Location
- OU015692.1:1574655-1576959[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-12 8.3e-10 38.4 0.0 5 37 19 51 16 53 0.94 2 2 4.6 3.6e+03 -2.1 0.0 28 35 93 100 93 103 0.82
Sequence Information
- Coding Sequence
- ATGGTCAGAACTTACAAGAAAAAAACTAGAAGAGGAGAATGGTCTATAGAAGTGATGAAAGAAGCTATAAATAAAGTTTTGAGTAAGAAAATGGGCTACAAGAAAGCTGCTCAAGAATATTCTATTCCACAAACTACATTGGAACGTTACATTCCCAAGCTGACTGTCCCGTCTCACGGTTGGCACCGAGGAGGCCACCTAATTAGAATTCCATTTCGCGGTCCTGTCGGTGGCAATATCGCCCAATCTACACACTCCTTCGTTACTTACGCCACTGTCAGCACCTCCACCCTTCTTCGGTTGTTCGACTTCGGGGCCACCTCATCTTCGCGGCCCAGACCGAGGCAAGAGACAGCGTGGACCGTGTGTATAGCAGCAGCCACACTCGGCGAGGATGAGGAGAAGCCCGCGATTCGTCGGGAGAGAAAGAAGAGACGCGCACGTAGCCGTGTTTCGAGCAGAGCGAAGAAGTCGGCTGGGAAGGAGAGCGAAGTTAAGCAAGAAGTTCTCGCAGCGGAACAAGCAAGAATTCCACGGCGGAAAGAGAGGAGAGACGAGCAGCGAGAAAACGAGAAAAACGCGGTGAATCCGTAG
- Protein Sequence
- MVRTYKKKTRRGEWSIEVMKEAINKVLSKKMGYKKAAQEYSIPQTTLERYIPKLTVPSHGWHRGGHLIRIPFRGPVGGNIAQSTHSFVTYATVSTSTLLRLFDFGATSSSRPRPRQETAWTVCIAAATLGEDEEKPAIRRERKKRRARSRVSSRAKKSAGKESEVKQEVLAAEQARIPRRKERRDEQRENEKNAVNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -