Basic Information

Insect: Noctua pronuba
Gene Symbol: -
Assembly: GCA_905220335.1
Location: LR999920.1:2978348-2989077[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.9 4.5e+02 2.3 0.6 6 21 305 320 303 321 0.92

2 14 0.024 2.2 9.6 0.2 1 23 332 355 332 355 0.95

3 14 0.0028 0.26 12.5 2.4 2 20 393 411 392 413 0.93

4 14 1.1 1e+02 4.3 1.7 1 23 418 440 418 440 0.97

5 14 0.6 56 5.2 1.3 1 20 684 702 684 704 0.89

6 14 0.96 89 4.5 7.7 1 23 716 738 716 738 0.96

7 14 0.18 17 6.8 0.1 2 23 744 765 743 765 0.96

8 14 3.4 3.1e+02 2.8 1.3 1 23 788 809 788 809 0.83

9 14 0.0017 0.16 13.2 0.3 2 23 886 907 885 907 0.97

10 14 4.8e-07 4.4e-05 24.4 2.7 1 23 913 935 913 935 0.99

11 14 2.4e-05 0.0022 19.0 0.3 3 23 942 962 940 962 0.96

12 14 0.0025 0.23 12.7 1.2 2 23 969 991 968 991 0.96

13 14 0.11 9.8 7.6 0.2 1 20 998 1017 998 1021 0.92

14 14 0.0014 0.13 13.4 1.6 3 23 1030 1051 1029 1051 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.9	4.5e+02	2.3	0.6	6	21	305	320	303	321	0.92
2	14	0.024	2.2	9.6	0.2	1	23	332	355	332	355	0.95
3	14	0.0028	0.26	12.5	2.4	2	20	393	411	392	413	0.93
4	14	1.1	1e+02	4.3	1.7	1	23	418	440	418	440	0.97
5	14	0.6	56	5.2	1.3	1	20	684	702	684	704	0.89
6	14	0.96	89	4.5	7.7	1	23	716	738	716	738	0.96
7	14	0.18	17	6.8	0.1	2	23	744	765	743	765	0.96
8	14	3.4	3.1e+02	2.8	1.3	1	23	788	809	788	809	0.83
9	14	0.0017	0.16	13.2	0.3	2	23	886	907	885	907	0.97
10	14	4.8e-07	4.4e-05	24.4	2.7	1	23	913	935	913	935	0.99
11	14	2.4e-05	0.0022	19.0	0.3	3	23	942	962	940	962	0.96
12	14	0.0025	0.23	12.7	1.2	2	23	969	991	968	991	0.96
13	14	0.11	9.8	7.6	0.2	1	20	998	1017	998	1021	0.92
14	14	0.0014	0.13	13.4	1.6	3	23	1030	1051	1029	1051	0.96

Sequence Information

Coding Sequence: ATGGCCGATACATCCAGAAAAAGGTCGAGAAAATCGAAGTTAGTGCCTCGTGAGTGTGCTGTGTACGAAGATGATCTTGAATTGCAGCTTCCAGTGGCGAAAATACCTAAAAAGCCTATTCCACCTATCACCAACGTTAAACAGAAAATAACTAAAAAAGTATTTAAACAACCAGAACCTATCATTACAAAACGAGAAGAAACAACTATTTCAACACAAGAAGTTGACACAAGCGTTCTAAGAAAAATCAACGCTTCGTCAGCAAAAGAAGATATGGAACCAAAAATAAAATCATCACCAAGAAAATTCGAGATTAATATTGAAGTGGAATCTTGTGACGATGATGATGACGAGTTTGCTAGCATTAGAGTTGAAAATGAATTGACACCTAAAGATGTACTCAATACAAAGACACATACAGCACCTATATCACTCTCTCGAGAACACATACTTGATGAAGCCGACCACATACTACAAACTTCAACAGAGGTCGCTGATAAAATCCTAAACATCTACCTAAGGAACACGATAGGCTGTGAACAGAAAGAAAAGCTGAAGAACGAAGGGTTTGAAAACCGAATCCAGGCAGCTTTAGACGAGTGGAAAAACTGGCAGTCCCGTAGTTTCCACAGAGAAGATCCTCTATTCTACAAATGCTATATCTGTACTAGATCCTGGTGGCTTCTCTCTGATTTCCGCAACCATCTCTCTTCAGCACACCCAAATGACAAAAAAATCAAGATTGTTTTGGAGAAGTATGAAATGCACGAGGCTAATTTAATAGCGTACCATGAAAGGCTCGTGGTGGTAAAAGACATATACACAGAAGGTCTTTGTCACCGATGTGGCAAAGACTATGCTGCTCATGAATTAGGAGAGAGATCCGAGCAGAAGTTTTACCAGAACAAAAGTTGCTCTAAGCAGTTTTTCACCTGCATGGGTCTCCGAGATCATATACAGTCTTGTCCCGTATGTAAAGTAGAGGATAAGCCATACAAATGTGACATTTGTAAGTCAAGATTTGATGCACAAGATGAAGTGACAAATCATTTAGTGATGTCTCACTCGGTGAGGTCTGATATACCAATCATGACGCATAATAATGACTGTAAGAGGTGTTCCGAAAAATATATTTGTAGATTCTTGCACAAGTGTTGGCAAGAAGGCCGTCACTGTGAATGTCCTCACTGTTCCAGGACCTTCTCAAACGACATGTCCTTGGAACTCCATATGGAACATTCCGAAATACCTTATGAATGTGAGGTTTGTGATGTCGTGATGAGGTATAGCTGCAAGAAGTTTGACCATATGTTGACTCACACTGACAAGTATATGTCAGTGAGGAAATGTGATAAATGTAACGGCCTTAATGTTTTTCTGAGCAGTGTTGATGCGGCAGCCCATTGGGAATTGGAACATGGGTTAGAGGATACGCAACAACAAATATATTTTCCTAAACTTATAGTACCATCGTCCTGCGTATATAAGAGCTTAGCGGAATCTGAAATGGCAGAACAAGAAGCATTGACAGAAGAACAAGAAGTGTTGACAGAAGAACAAAAATCGATGTTGGAAGAAGAATTAGTACCAGCATATGAACAGAGATTACTTGACTTGCAAGAATCGACGACTGACTTTATGATGGATGATGTTGTCGTCAAAGAAGAACCAGAAGACTTCGAAGATAGTCCACGACTTATAATCAAAGAAGAGCCTCTAGACGAAGCAGAAACCCAAATACAAGACCAAGAAAATGAAACAGACAACTTTGAACACCAAATAACCGTGAAAGAAGAATATATTGAAGAAGACATAGATGTAGATGAAGAATATGATGGAGATATCATAAAACTCAATTTTAACATCGAAGACTTGTTGGTGAAGCAAGAATCTGTCATAGAAGACGGAGAAGAATATTCTCAACCACAAACAGAAGATGAAGAAGATTCACAAGACTTTCCTCTACCGATGAAAGAGGAAGAAGAAGAAGAATCTATGTTAGAACCAGAGATTATAATCAGAAGAGGTGCCAAAAAAAAAGAAAATAAATACCGATGCACAAAATGTGGTTTTACAGCGAATCATAAACAGTACAGAGCTCATATCGAGTTTGACTGTCTCAAAAACCCGATTAAACATAGAGACTATTATTGTTCAAAGTGTAAATGCACATTTAGTACTATGAAGAAATATTTGTCTCATTTTGAAAAGCACGGGTATAAGCATAAATCGTGCCCCGAGTGTTTGAATATATTTGAAAACTACTCCGTTTTAGCGACACATGTGCAGTCGCATATAAAACAGAATTTTGTGCGAGTGAAGATGATTACGCATGCAGGTAAAGCTATGACAAAACCTGACTTTCAATGCAAGAAATGTACCGAAACGATATCTTTGAAACAATTCTTTGAACACTGGGAGCTACATATTAACGCCCAGCCTACTCACCCAATAAAGGTGACCTCTAGGCCTCCGTTGAAACGTGGAGAACTACATGAGACTATTATAAAGGAGTGCATTGCTCGTCTCAACAGAACACCAAAGGAATGTAACCATTGTCACCGCTGGTTCAAGCGCGTCAACGAGTGCAAGAGACACATCATTGAACACCTCCTAGTAGACGCTTACAACCAGAAACACATATTCCACGAGCTCAAATGTCAAATATGTGAAACCGGGTTCGCTTTGCCGGAGAAATATAAGCAACACATGCGAGACCACGCGTCTTTACCTGTGTATAAGTGTGAATTGTGTGATAGGACTTTCAGTGATTCTAGTAACTTTACTAAGCATAAAAAAGTGCATAATTTGAGAGTGATAATTTGTGATTTGTGCGGCAAGAAGTTTCAGTCTAAGGTGTCTTTGGAAAAACATATTGAGAAACACAAAACCACAGCACCGATCACTTGCGAGCTTTGCAACAAAATCTTCTATTTCGACACTTCCTATCGCCGTCATATACGCTACTACCATGAAAAGACCACCCATGGGTTCCGCTGCGTGAACTGCGGTCTACGATTCAACACGTTAAAAGCTAAATGGGACCATATGTGGAGCGCCCATAGAGAACGTAAGCAGAAGGCCGACTGTCCGATATGTCACGAGTCTTTCCGAAAATTCTCCGACGTGCGCACACATGCTAGGAACAATCATTTAATGGAGGTTTCCGTATTAAGTGTCAAAAAAGCGAGTAATAAAGCGGTTAATGTGGATAAGTTTATGAGTGATACGACGACGATTAAAGTCGGTAGATCGGAGACTTTGATCGTCTATGATTCTGATTAG
Protein Sequence: MADTSRKRSRKSKLVPRECAVYEDDLELQLPVAKIPKKPIPPITNVKQKITKKVFKQPEPIITKREETTISTQEVDTSVLRKINASSAKEDMEPKIKSSPRKFEINIEVESCDDDDDEFASIRVENELTPKDVLNTKTHTAPISLSREHILDEADHILQTSTEVADKILNIYLRNTIGCEQKEKLKNEGFENRIQAALDEWKNWQSRSFHREDPLFYKCYICTRSWWLLSDFRNHLSSAHPNDKKIKIVLEKYEMHEANLIAYHERLVVVKDIYTEGLCHRCGKDYAAHELGERSEQKFYQNKSCSKQFFTCMGLRDHIQSCPVCKVEDKPYKCDICKSRFDAQDEVTNHLVMSHSVRSDIPIMTHNNDCKRCSEKYICRFLHKCWQEGRHCECPHCSRTFSNDMSLELHMEHSEIPYECEVCDVVMRYSCKKFDHMLTHTDKYMSVRKCDKCNGLNVFLSSVDAAAHWELEHGLEDTQQQIYFPKLIVPSSCVYKSLAESEMAEQEALTEEQEVLTEEQKSMLEEELVPAYEQRLLDLQESTTDFMMDDVVVKEEPEDFEDSPRLIIKEEPLDEAETQIQDQENETDNFEHQITVKEEYIEEDIDVDEEYDGDIIKLNFNIEDLLVKQESVIEDGEEYSQPQTEDEEDSQDFPLPMKEEEEEESMLEPEIIIRRGAKKKENKYRCTKCGFTANHKQYRAHIEFDCLKNPIKHRDYYCSKCKCTFSTMKKYLSHFEKHGYKHKSCPECLNIFENYSVLATHVQSHIKQNFVRVKMITHAGKAMTKPDFQCKKCTETISLKQFFEHWELHINAQPTHPIKVTSRPPLKRGELHETIIKECIARLNRTPKECNHCHRWFKRVNECKRHIIEHLLVDAYNQKHIFHELKCQICETGFALPEKYKQHMRDHASLPVYKCELCDRTFSDSSNFTKHKKVHNLRVIICDLCGKKFQSKVSLEKHIEKHKTTAPITCELCNKIFYFDTSYRRHIRYYHEKTTHGFRCVNCGLRFNTLKAKWDHMWSAHRERKQKADCPICHESFRKFSDVRTHARNNHLMEVSVLSVKKASNKAVNVDKFMSDTTTIKVGRSETLIVYDSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01063304;
90% Identity: -
80% Identity: -