Basic Information

Insect: Noctua pronuba
Gene Symbol: RREB1
Assembly: GCA_905220335.1
Location: LR999920.1:5483096-5500573[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.02 1.8 9.9 0.2 1 23 290 312 290 312 0.98

2 11 0.0042 0.39 12.0 2.3 1 23 319 341 319 341 0.97

3 11 4.3 4e+02 2.5 3.1 1 23 345 367 345 367 0.89

4 11 0.0022 0.21 12.8 2.2 1 23 372 395 372 395 0.98

5 11 0.0022 0.2 12.9 0.2 2 23 400 422 399 422 0.94

6 11 0.0049 0.46 11.7 0.1 3 21 436 454 436 455 0.95

7 11 1.4 1.3e+02 4.1 0.1 3 23 504 525 502 525 0.95

8 11 0.006 0.55 11.5 0.1 2 19 541 558 540 562 0.92

9 11 1.1e-05 0.00099 20.1 1.0 1 23 568 590 568 590 0.99

10 11 0.00017 0.016 16.4 4.0 1 20 597 616 597 619 0.95

11 11 4.8e-05 0.0044 18.1 1.4 1 23 625 648 625 648 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.02	1.8	9.9	0.2	1	23	290	312	290	312	0.98
2	11	0.0042	0.39	12.0	2.3	1	23	319	341	319	341	0.97
3	11	4.3	4e+02	2.5	3.1	1	23	345	367	345	367	0.89
4	11	0.0022	0.21	12.8	2.2	1	23	372	395	372	395	0.98
5	11	0.0022	0.2	12.9	0.2	2	23	400	422	399	422	0.94
6	11	0.0049	0.46	11.7	0.1	3	21	436	454	436	455	0.95
7	11	1.4	1.3e+02	4.1	0.1	3	23	504	525	502	525	0.95
8	11	0.006	0.55	11.5	0.1	2	19	541	558	540	562	0.92
9	11	1.1e-05	0.00099	20.1	1.0	1	23	568	590	568	590	0.99
10	11	0.00017	0.016	16.4	4.0	1	20	597	616	597	619	0.95
11	11	4.8e-05	0.0044	18.1	1.4	1	23	625	648	625	648	0.95

Sequence Information

Coding Sequence: ATGGATGAATTAGATGACAATGTCCGTGCAAGGCTAAGTGAAGCTATTGACGCGGAATTCTTACGACTTGACGAAAGGCCAGATGGGGAGCCGATACCCAATTTTGACGTAGCTGCATTCACTCTGAACTTTGAAAATGAAACAATAGCTGGATTAGTCAGTGATAATGAAGATACTGAGGATCAGGAAGAAAAAAACACTAGCACTGTAAAGGAATTTTGCCGCATTTGCCTCTGCGATGACAGGAAGCTGAGTACAATATCACCACAAAATCGGGTGGCTTTCCAGTGCGTACTCCGTCAGGATGAGAGTAAAAGCACCGAGCCAAGACTTTCCCAGAAGGTCTGCTGGGAATGCAACGCCCGGATGACCTCATTCAGAGTGTTCAGGACGAAAGCCATACAGACCAACACCTTACTATACTCACTCATCCGCCCGTTCATGAATGAAACTCTCGATGTTTCATCCATCGACAGGGCCGCTCTCAGCCTTACAACCTCCTTACAGATGAAAGTCTACCCAGCAGACCACACCGATTATCATTTTGTGTGCTGCAAAGACCAGCTAGGCACGGGGCTATGCCAGAACCACGACTACCAGAATAACGGAAAAACGTTACCCAACATAGATTTAAGCGACGATGACTCACCTATATTTAACGACGTAGATTCTAGCAACAAAAAAAAAGAAAAAATTAAAAAGAAGAAAAAAAAACTTAAAAAAGTAATAAAAAAGGTCGATCGACGCTGTAAGTCGGCGAAAGATGTGTTAAACAGTGATATTTTTAATATTAAGGACTTAAATCATGAAGAGCAAATGTATGAGATAAATAAACGACAGTTTTCTAGTAATTATAAGAATTCTGGATTTAAATGTGGAGAATGTTTCAAAGGATTTTTGGATGAAGATGCTTATAAAGGACATATGATAAGGCATACGGATCAATGCGGAGTATACAGCTGTGCAATATGTAAGACTCACTTCAAAAAGTTGCAAGCTCTCCGAAACCACGCGACCAGTCATATGCAGAAGTTCAGCTGTAAGAGGTGTAACTACGTTACTTTTAGGAGGCATGCAGCTAAACTACACGAAGAATTCCATAATGGCACCAAATACGTTTGTACACACTGCCTTGAGAACTTTGACAAACTGTCAACCTACATGAGCCACATTCGCATAAAGCACCCTTCAGACATAGTGTGCCAATTGTGTGGATACTCCTTCGTAAGCGAGAAGGGACTCGCTCTTCATAAGAAGCTGAAACACCGGTTTGATGAGCAACAAGTCCCCACAGACGGTCCATGGTGCACTAAATGTGATGTACAATTCATCAGCAAAGAGGCATTAGAAAGGCATGTTCAATTATCTGCAAAACATAGCGACGAAAATATAAAATCAAGCAAGCCTCATGCCCGCCGTGACAACAGAGATCAGGACAGCAGTAAGAGTCATAATGATGCAGAAGGCAAGAAAAAACGGAGCTCCTGCAAGCCTGAAGAACCAATAGCTTGTGAACAGTGTGAAATGCAGCTGGCAGACCCTCTGTCGTACTACAGACACTTTAGACGGATGCACCCGGACAAGAACCGAACCAACTACCCCTCTATGAAGTCCAAGAGCATGTGTGAAGTTTGTGGGAAGATGTTTCAGAGCCTAGCCCTCCTTCAAGACCACAGCTGGACCCACACAGACTCCAAGCAATTTAAATGCTCAGCGTGCGACAAGCAGTTTGTGCGTAAATACAGGCTCATAGCGCACCAGCGCGTGCACGGCGCTACGCGTGGCAAGCACAGCTGTAGTGTGTGTGCCAAGAGTTTCACTACGAAGAGCAATGTGCGGAGACATATGGTGTGTCACACGGGTTTAAAACCGTTCAAATGTGAGATGTGTGGCAAAGGCTTTAAGCACGCGAGTGAGAAACGCGTCCACATCACTTACGTACATCTTAAGAAGCCGTGGCCGAAGCGGGCGAGAGGGAAGCGGAGACCTGACGCTAGACAGAATCAAGCACAACCCACACCGACACCTGCATCAGACATTCAACCCGCACAAATGGACATACGATTAGACAATAAGCCTAGTTATTATAATATTAATAAAATGTAA
Protein Sequence: MDELDDNVRARLSEAIDAEFLRLDERPDGEPIPNFDVAAFTLNFENETIAGLVSDNEDTEDQEEKNTSTVKEFCRICLCDDRKLSTISPQNRVAFQCVLRQDESKSTEPRLSQKVCWECNARMTSFRVFRTKAIQTNTLLYSLIRPFMNETLDVSSIDRAALSLTTSLQMKVYPADHTDYHFVCCKDQLGTGLCQNHDYQNNGKTLPNIDLSDDDSPIFNDVDSSNKKKEKIKKKKKKLKKVIKKVDRRCKSAKDVLNSDIFNIKDLNHEEQMYEINKRQFSSNYKNSGFKCGECFKGFLDEDAYKGHMIRHTDQCGVYSCAICKTHFKKLQALRNHATSHMQKFSCKRCNYVTFRRHAAKLHEEFHNGTKYVCTHCLENFDKLSTYMSHIRIKHPSDIVCQLCGYSFVSEKGLALHKKLKHRFDEQQVPTDGPWCTKCDVQFISKEALERHVQLSAKHSDENIKSSKPHARRDNRDQDSSKSHNDAEGKKKRSSCKPEEPIACEQCEMQLADPLSYYRHFRRMHPDKNRTNYPSMKSKSMCEVCGKMFQSLALLQDHSWTHTDSKQFKCSACDKQFVRKYRLIAHQRVHGATRGKHSCSVCAKSFTTKSNVRRHMVCHTGLKPFKCEMCGKGFKHASEKRVHITYVHLKKPWPKRARGKRRPDARQNQAQPTPTPASDIQPAQMDIRLDNKPSYYNINKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01062183;
90% Identity: iTF_01064030;
80% Identity: -