Npro003279.1
Basic Information
- Insect
- Noctua pronuba
- Gene Symbol
- -
- Assembly
- GCA_905220335.1
- Location
- LR999920.1:7428232-7451498[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.017 1.6 10.1 1.2 1 23 224 246 224 246 0.98 2 12 0.023 2.2 9.6 1.6 1 23 523 546 523 546 0.92 3 12 0.34 31 6.0 1.4 1 23 550 572 550 572 0.90 4 12 0.00082 0.075 14.2 4.4 1 23 577 600 577 600 0.98 5 12 0.00011 0.0098 17.0 2.5 1 23 604 627 604 627 0.97 6 12 0.047 4.4 8.7 0.1 3 20 648 665 647 666 0.95 7 12 0.0099 0.91 10.8 0.2 2 23 680 701 679 701 0.97 8 12 5.8e-05 0.0053 17.8 1.5 1 23 720 743 720 743 0.98 9 12 9.1e-06 0.00084 20.4 1.9 2 23 753 774 752 774 0.97 10 12 4.6e-05 0.0043 18.1 2.6 1 23 780 802 780 802 0.98 11 12 2.5e-06 0.00023 22.1 0.3 1 23 808 830 808 830 0.98 12 12 4.8e-06 0.00044 21.2 2.2 1 23 836 859 836 859 0.98
Sequence Information
- Coding Sequence
- ATGGATAAACTGCAGATGTGTAGAATATGTTTAATGGAGAATATTCGCATGCATGTCATCGCCAATAAGAACCTGCAGGAAACATATGAGAAGCTGACTGATATTCCATTTGTAACTGAAGACAGTAGACCGATGCTCGCTTGTTTCTTCTGCTACACCAAACTGAAGCAATGCTGCCAGTTGCAGAGGAAATGTGTGGAAGCCGAGAAGCTGTTCGCTCAGATGTTGGATGGGGTGACACCAGTAAAAATAAAAGGGGAACTGGATAATTTTGGTGGATACATCACGACATCGATTCAACATTTGAGTATACTTGGTGATCAGACAGAAAGCGATGATATCAAGCAAGAACTGCCTGCTGATTGTGATGGAGGTGATGATGTTGAGCTCAAGGTGGAACTTCACCATGATGATTCAGAACCAGAAAATCTAGACAGCTATCATGAAGTAGACATACCACCGCACCAGGCTGCATCAGATTCTGAAGATGATGTACCTCTGATGAAACTTAAGACGGAAGTGGAGAAAGAACAAGAGGTACCTAAGAAGAAGAAAGTGAATAAGAATAAAACTCGAAAACCAGATTGTAGCGTAATTCTTCTAAGTAAGACTGAACAGCAGGACAACCTGCTGGCTAGATCGAAGTCTTCCAACTATTTACACTCGCCTTTCAAGTGCAGTTCCTGTTACAAAGGATTCGTGGACGCCAGAGCATATGACAACCATAAGATGAAGCATGACTTGGCAATTCCTTCCACGTGCTCTTTTCTCGTGCCACCTCGAACCAACCCTCGCAGTAAGCGTCCAGATCATCTCGCGACCTCTTTCTGTGCCTTCCGTCTTCCGGCAACCATCGCGAGGAGCGATCTCGCCCGGAGATTCTTAGCTCCCCTGACTCCAGGGTTGAACCTGCGCCCGTCCACGCCAGCACAACCGCTGGAGACGCCGGGCACTTGGGGCCTGTCTCTTACTCTTCTATCCATAGTGCGAGGGGGGTTGGACCATAACCCGCCACGCTGGAGCGTCGCTCACACGATTAACAGTCGAGGTGCAGTTGAGGCGCGGGCGGTTAAGAGGCACGCCGCAACAAAGTTTTCTTTACAAATGAATGGCAGTGCGCTCATATACAAGAGTTGCGGCGCGGGCGAGGTGAAGGCGGGGCGGAGGCGAGGTGAAGGCGGGGCGGACGCGAGGTGCAGGCGCAGGAGGGGCGCTCAAGTGTGCCCAAGCCACGACTCCACCGCCATTTTGTCATTTGGTTTCTGCTCCGCCCCGGGTAGTGCTACCGTGTATCGTCTTTCTGCGTACGAAAAGAGTAGGATTATATTGTTGAAAGAACAGGGGACCTCGATTACGGATATCGCCAATGAAGTGGGAATTACGAGAAAGACAGTCTACCATTGGCTCAAAAGGTGGACAGAGGAAGGAGACGTAGCATCTCGCAAGTCTGGCGGCCGGAAACGGAAGACAGCCGCCGCGCAGGACACGGAACTGGTCAACCTGGTCCAGAACAACACGTCTCTACGTATCCAAGACTTGTCGGCTTTGCTACAGCGCAGCGGACCACACGTCTGTGACATATGCCATATGCGATACAGGTCTGTGCAACTTTTGCGGACGCACGCAAGCAATGCACACTCTCGCATTTTTAAATGCAACAAATGTGGTTATGTCTCGCATACGGGTAATCAAGCCAGGGTTCACGAGAAATGGCACGACGGGCATACTTATGAATGTCAACTATGCAGTCATACGTTCAGGAAACCCACCTCATACCTATCTCACATGCGCAAGAGACACCCGACAGAACACGTCTGCAATATTTGCGGAGAGACCTTCGTTGGAAAACATGGCCTGCAGATGCATAAAAGGAAGACTCATATCAACGGGGAAAAGATGGTGGACCCCAACGACCCCAATGACCCCGGTCCTGAGAGGTTCTGCGCCGAATGTAACATACAGTTCTATAATTCGGAAGCTTGGAAACGACATATATTGTGCTCTGTCAAGCATACTCTGAAGACTGAGGAAAGTAAAACCTGCTCTATCTGTCTATGGAAGTACGTCGGCAACGTGTCTTTGGAAACGCATATGAAGGAGCACGCTAAGGCTCTGCGTAGGAGCAGGAAACCCCCCGCTACTGCCAAAGAGCGGATATTTAGATGTAATCAGTGCGGCTCAAACTTCATGACCCGGTCCAAGCTGCAGGCGCACATCAACAGGACTCACTTGGGGCTGAAGTATAACAAGAACATCGTGTGCGAAGTGTGCGGCAAGAAATGCACGTCAAACGCCACCCTGAAGTACCACCAACGCACCCACACGGGTGAGAAGCCCTACCCCTGCAGCAGCTGCTCCAAGCACTTCGTGGACAGCAACCAGCTGCGCATACACACGCGCACGCACACGGGCGAGAAACCATATGTCTGTGCAGCGTGCGGCAAGCGATTCACACAGAAACCAGCGCTGAATAGGCATTATAGAGTACACACCGGAGCCAAGCCCTACACCTGCCAATACTGTTCGCGAACATTCAGCCAGTCAAACTCACTGAAACTCCACGTAAAAACCGTACATTTGAAACAACCCGCCAACAGTAGGAAGAATAAACCGAAAACCGTAACTCAGGAAACTAAAACCGAGAAAAATTGTGAAGAATTGGAAATTGGTACATCACTACAGGACGTAAGGGTGTTCTCGAAATAG
- Protein Sequence
- MDKLQMCRICLMENIRMHVIANKNLQETYEKLTDIPFVTEDSRPMLACFFCYTKLKQCCQLQRKCVEAEKLFAQMLDGVTPVKIKGELDNFGGYITTSIQHLSILGDQTESDDIKQELPADCDGGDDVELKVELHHDDSEPENLDSYHEVDIPPHQAASDSEDDVPLMKLKTEVEKEQEVPKKKKVNKNKTRKPDCSVILLSKTEQQDNLLARSKSSNYLHSPFKCSSCYKGFVDARAYDNHKMKHDLAIPSTCSFLVPPRTNPRSKRPDHLATSFCAFRLPATIARSDLARRFLAPLTPGLNLRPSTPAQPLETPGTWGLSLTLLSIVRGGLDHNPPRWSVAHTINSRGAVEARAVKRHAATKFSLQMNGSALIYKSCGAGEVKAGRRRGEGGADARCRRRRGAQVCPSHDSTAILSFGFCSAPGSATVYRLSAYEKSRIILLKEQGTSITDIANEVGITRKTVYHWLKRWTEEGDVASRKSGGRKRKTAAAQDTELVNLVQNNTSLRIQDLSALLQRSGPHVCDICHMRYRSVQLLRTHASNAHSRIFKCNKCGYVSHTGNQARVHEKWHDGHTYECQLCSHTFRKPTSYLSHMRKRHPTEHVCNICGETFVGKHGLQMHKRKTHINGEKMVDPNDPNDPGPERFCAECNIQFYNSEAWKRHILCSVKHTLKTEESKTCSICLWKYVGNVSLETHMKEHAKALRRSRKPPATAKERIFRCNQCGSNFMTRSKLQAHINRTHLGLKYNKNIVCEVCGKKCTSNATLKYHQRTHTGEKPYPCSSCSKHFVDSNQLRIHTRTHTGEKPYVCAACGKRFTQKPALNRHYRVHTGAKPYTCQYCSRTFSQSNSLKLHVKTVHLKQPANSRKNKPKTVTQETKTEKNCEELEIGTSLQDVRVFSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -