Npro025298.1
Basic Information
- Insect
- Noctua pronuba
- Gene Symbol
- -
- Assembly
- GCA_905220335.1
- Location
- LR999922.1:4949638-4953374[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.016 1.5 10.1 4.6 1 23 10 32 10 32 0.99 2 19 5.4 5e+02 2.2 0.4 2 23 58 80 57 80 0.84 3 19 5 4.6e+02 2.3 0.6 5 23 107 126 104 126 0.87 4 19 6.8e-05 0.0062 17.6 0.6 1 23 132 155 132 155 0.97 5 19 0.085 7.8 7.9 6.7 3 23 162 183 160 183 0.93 6 19 0.094 8.7 7.7 0.9 1 20 188 207 188 211 0.79 7 19 1.8e-06 0.00017 22.5 0.3 1 23 218 241 218 241 0.95 8 19 0.0061 0.56 11.5 3.6 2 23 248 269 247 269 0.97 9 19 0.00096 0.089 14.0 2.0 1 21 275 295 275 296 0.96 10 19 0.48 44 5.5 3.5 1 23 336 359 336 359 0.93 11 19 0.0092 0.85 10.9 0.1 2 23 385 407 384 407 0.91 12 19 0.015 1.4 10.2 3.9 2 23 430 452 429 452 0.94 13 19 0.0039 0.36 12.1 0.0 1 23 458 481 458 481 0.94 14 19 0.037 3.4 9.0 5.7 2 19 488 505 487 510 0.88 15 19 0.017 1.6 10.1 0.1 2 23 516 538 515 538 0.93 16 19 0.0015 0.14 13.4 1.5 1 23 545 568 545 568 0.95 17 19 0.00044 0.041 15.0 0.2 3 23 576 596 574 596 0.93 18 19 2.4e-05 0.0022 19.0 2.5 1 23 602 624 602 624 0.98 19 19 3.8e-06 0.00036 21.5 0.7 1 23 630 652 630 653 0.96
Sequence Information
- Coding Sequence
- ATGCCCTTCAAATGGTACCTTAACCGTTATAGGTGTTTCTACTGCGATGAAATCTTCCTCGACTGCTCAAAATTAAAAGATCACACGAAAAAACACGACGAAATAAAAATAAGTAGGATTCTGACTAAGATCGGGTGTCACAGCCGAATTAAATGGGATATTTCTGAGATTTCCTGCAAATTGTGTCCCAAACCGATACTAACTTTCGATCACTATTTAAATCATTTATCTGAAGCTCACGATTTGGAAATCGATAAAGATGTGTTCCATAAATATTGCTACATATTCAAATTGTCGGACGAAGGCATGATTTGTATCGAGTGCTGCGAAAGCTTCAAGTTCTTCGGTCCTCTACTGAGACATATCAACAAATACCACAATAACGCTAAAAAATATGTTTGCGACTACTGTGGTTTAGCTTTTACGTTAAAAGGAACAATTAAGCATCACATAAGAAACGTACACTCTGGTATAAAAACAAATTGCAAATTCTGCGACAAAAATTTTCAAAGCAAAGTTCATTTAGCAAATCACTGCAGAAAATATCACAAAACTGGCAAATTCGTTTGCGACTTATGCCCTAAAGCTTTTGAAAGTAGATACTTGAAAAGATGTCACATTGCTTTGGACCATAACGTGAAGAGTCTCCAATTTCCTTGCGAGACGTGTCCTAAGATCTTCACTCGTAAGAGTACTCTCATGAAACATGTTTCGGTGGTGCATTTAAAGGAGACGTTCACGACTTGCCACCTCTGCGGGCACAAGGGATATGATATGCAAGCTTTGAGACGGCATATGAATACTCACGATCCCACTAAGCATTTTACCTGTCATATTTGTAATTTAAGGTTTAGAATGCAAAAGACTTTCGATGCTCACATGAAGTCCGACGAAACAAAAGAATCAAGACGCGTAGAAAGGCAAAGAAAGGACGACCTAACAAAATTCATGACCCTCATCATAGAGTACTCCTCAATCCTCCCGTTCAGATGGTCTGCTAACAAATACATGTGCTTCTACTGCTGCTGCTCCTTCGTAGAAAGCGCTAACCTGAAAGAACATACCATAGAGGAACACAAGGGTGCCAATCTGAAAAACGTACTCAGAACGTTAATAGGAAGCAGTCGCGTCAAACTTGATACCTCTGAAATCAGCTGCAAAAAATGTGGTCAAGAATTCCGCGTTTTCGAAGAATTTGTGAACCATTTGGCAGCAGCCCACCAATTTAAAATCAACAAGGAAATAGCTAAATGTATATTTACTTTCAATCTTTCCGATGATGGGATGTCTTGCCATGAATGTGGTCAGGAGTTTAGATTTTTTGGAACCTTACTAAAACATGCCCACAAATTCCATAACAAATATAAAACTTTTCTTTGCGAGATCTGTGGACAGGGTTTTGTAGCTAAAGCGAATGTCGTAAGCCATATAAAAAACGTTCACACATTCACCCAAGGCTTACACTGTCGTAGATGCGACAAAGTATTTCGAAACCACTATTCTTTACAAATTCACTGCGAAAAGGTCCATAGAACTGAGATGCTGAAATGTCCGAAGTGTCCAGAGATGCTTGCTTCACAATATTTGAAGAAACGACACCTAGCGTTAGTTCATGATGTCAAAAAACTGCAATTTAACTGCGACCAATGCGAGCGAGTTTTTACAATGAAAAGCCGACTCGTACAGCATAAGTTGAGGACTCACTTGAAGCAGAAGACGATAGCCTGCGAAATCTGCGGTTTCAAAGTTTTCAGCAGCGATCTTCTGAAGCGTCACATGGTCCGACATGATGATTCAAGACCGTTTGAGTGTAAATTTTGCCAAAAGACGTTTCAGAGGAAGAAAACTTTGGATATACATATACGGATACATACGAATGACAAGAGGTATGTTTGTAAAGAGTGCGGGAGGGCCTTCGTTCAAGTGACGAGTTGGAAGTTGCATATGAGGGTCCATCATGGGGGTGCCGCTGGGGCGTCTTGGCATTGA
- Protein Sequence
- MPFKWYLNRYRCFYCDEIFLDCSKLKDHTKKHDEIKISRILTKIGCHSRIKWDISEISCKLCPKPILTFDHYLNHLSEAHDLEIDKDVFHKYCYIFKLSDEGMICIECCESFKFFGPLLRHINKYHNNAKKYVCDYCGLAFTLKGTIKHHIRNVHSGIKTNCKFCDKNFQSKVHLANHCRKYHKTGKFVCDLCPKAFESRYLKRCHIALDHNVKSLQFPCETCPKIFTRKSTLMKHVSVVHLKETFTTCHLCGHKGYDMQALRRHMNTHDPTKHFTCHICNLRFRMQKTFDAHMKSDETKESRRVERQRKDDLTKFMTLIIEYSSILPFRWSANKYMCFYCCCSFVESANLKEHTIEEHKGANLKNVLRTLIGSSRVKLDTSEISCKKCGQEFRVFEEFVNHLAAAHQFKINKEIAKCIFTFNLSDDGMSCHECGQEFRFFGTLLKHAHKFHNKYKTFLCEICGQGFVAKANVVSHIKNVHTFTQGLHCRRCDKVFRNHYSLQIHCEKVHRTEMLKCPKCPEMLASQYLKKRHLALVHDVKKLQFNCDQCERVFTMKSRLVQHKLRTHLKQKTIACEICGFKVFSSDLLKRHMVRHDDSRPFECKFCQKTFQRKKTLDIHIRIHTNDKRYVCKECGRAFVQVTSWKLHMRVHHGGAAGASWH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -