Npro014849.1
Basic Information
- Insect
- Noctua pronuba
- Gene Symbol
- -
- Assembly
- GCA_905220335.1
- Location
- LR999913.1:5320248-5321724[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-11 3.2e-08 33.9 0.0 1 38 15 53 15 57 0.92 2 2 3.8 1.9e+03 -0.7 0.1 20 27 120 127 119 137 0.83
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTATAAAAGGACTACTTCTAGACAAGAATGGGATCCGGATAACATGAAAAAAACCGTTCAAGCCGTATTTGATGGCACCATGGGTTACTTGAAAGCGGCCAAAACTTTTGAGGTACCAAAATCAACATTACAAGATCGAGTAAACCGATTTAAACAGAACAATGATCTGGACGGTTCCACACGCAAAGGCTTGGGACGATTTAAGCCCATTTTTTCGACTTCCCAAGAACAAAGTCTAGTTGAACATGTCTTGATCATGGAAAAACGATTATTTGGTCTCACGTATAAAGATCTTCGACGCTTAGCGTATCAGTTCGCAGAAGCAAACCGTATTGACCATTGTTTCAATAAGCTGGCAAGACTTTTTGGAGCAGCATACTGTAAAGCGGCTACTATACAGAACGCCGTGTCTGGCTTTACTAAAACAGGCATATTCCCAACGAACAGGACAGTATTCGGTGAAGCAGATTTTGCCGCTGCTGAAACAACGGAAATACCTTCTACGACACCATCAACTTCCGCTGATGCATATGTCAACCCGACACCGTCAACTTCTTCTGCGCCACTCGTTCACTCAATATCATCAATTTCTCCGCTACCGCCGCCAGTTCCTACTACGTTGAATCTGACAGTGTCTCCGGCGGATATAATGCCAATTCCTAAAATAAGTGTGGACCGAAAAAGAGCAAGCGATCACCGAAGAAGAAAAACTGCTGGGGGGCAATCGCGCTAA
- Protein Sequence
- MPRNYKRTTSRQEWDPDNMKKTVQAVFDGTMGYLKAAKTFEVPKSTLQDRVNRFKQNNDLDGSTRKGLGRFKPIFSTSQEQSLVEHVLIMEKRLFGLTYKDLRRLAYQFAEANRIDHCFNKLARLFGAAYCKAATIQNAVSGFTKTGIFPTNRTVFGEADFAAAETTEIPSTTPSTSADAYVNPTPSTSSAPLVHSISSISPLPPPVPTTLNLTVSPADIMPIPKISVDRKRASDHRRRKTAGGQSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -