Npro014340.1
Basic Information
- Insect
- Noctua pronuba
- Gene Symbol
- -
- Assembly
- GCA_905220335.1
- Location
- LR999894.1:17834219-17835957[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.1e-13 3.6e-10 40.1 0.0 1 38 15 53 15 57 0.92 2 2 5.4 2.8e+03 -1.2 0.1 20 27 120 127 119 136 0.83
Sequence Information
- Coding Sequence
- ATGCCGCGTAATTATAAAAGGACTACTTCTAGACAAGAATGGGATCCGGATAACATGAAAAAAGCCGTTCAAGCCGTATTTGATGGCACCATGGGTTACTTGAAAGCGGCCAAAACTTTTGAGGTACCAAAATCAACATTACAAGATCGAGTAAACCGATTTAAACAGAACAATGATCTGGACGGTTCCACACGCAAAGGCTTGGGACGATTTAAGCCCATTTTTTCGACTTCCCAAGAACAAAGTCTAGTTGAACATGTCTTGATCATGGAAAAACGATTATTTGGTCTCACGTATAAAGATCTTCGACGCTTAGCGTATCAGTTCGCAGAAGCAAACCGTATTGACCATTGTTTCAATAAGCTGGCAAGACTTTTTGGAGCAGCATACTGTAAAGCGGCTACTATACAGAACGCCGTGTCTGGCTTTACTAAAACAGGCATATTCCCAACGAACAGGACAGTATTCGGTGAAGCAGATTTTGCCGCTGCTGAAACAACGGAAATACCTTCTACGACACCATCAACTTCCGCTGATGCATATGTCAACCCGACACCGTCAACTTCTTCTGCGCCACTCGTTCACTCAATATCATCAATTTCTCCGCTACCGCCACCAGTTCCTACTACGTTGAATCTGACAGTGTCTCCGGCGGATATAATGCCAATTCCTAAAATAAGTGTGGACCGAAAAAGAGCAAGCGATCACCGAAGAGGAAAAACTGCTGTTATCACTTCCTCCCCCTATAAAAATGAGTTGATAACCATCTCACAAAATAAAACTCCTAAGCTTAATTTGAATCAACCGCCTAAGACCAAAAAACCAAAACGAAAAATAATAAATGATAACATTTGCTTGTACTGCCTCGAAGAATACGGTTCAAGCCGCGTGGATGAAGGCTGGGTGCAATGTACGGAGTGTAAAGGTTGGGCTCATGAAGGCTGTACAGGTTATGACTCAGAGGATTTAGATAATTTTGTATGTATGGGATGCGTTGCTTCTAGATAA
- Protein Sequence
- MPRNYKRTTSRQEWDPDNMKKAVQAVFDGTMGYLKAAKTFEVPKSTLQDRVNRFKQNNDLDGSTRKGLGRFKPIFSTSQEQSLVEHVLIMEKRLFGLTYKDLRRLAYQFAEANRIDHCFNKLARLFGAAYCKAATIQNAVSGFTKTGIFPTNRTVFGEADFAAAETTEIPSTTPSTSADAYVNPTPSTSSAPLVHSISSISPLPPPVPTTLNLTVSPADIMPIPKISVDRKRASDHRRGKTAVITSSPYKNELITISQNKTPKLNLNQPPKTKKPKRKIINDNICLYCLEEYGSSRVDEGWVQCTECKGWAHEGCTGYDSEDLDNFVCMGCVASR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01064561;
- 90% Identity
- iTF_01064561;
- 80% Identity
- -