Njan023578.1
Basic Information
- Insect
- Noctua janthina
- Gene Symbol
- -
- Assembly
- GCA_963576755.1
- Location
- OY755077.1:139573-155489[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 0.012 0.91 10.8 2.2 1 23 9 31 9 31 0.97 2 27 1.7e-06 0.00014 22.8 1.3 2 23 36 57 35 57 0.96 3 27 0.018 1.4 10.2 0.7 1 23 63 85 63 85 0.97 4 27 0.009 0.71 11.1 1.5 2 21 92 111 91 116 0.93 5 27 0.049 3.9 8.8 0.1 1 21 124 144 124 147 0.86 6 27 0.061 4.8 8.5 0.3 4 23 156 178 153 178 0.89 7 27 0.0009 0.071 14.3 0.6 1 23 187 209 187 209 0.97 8 27 0.64 51 5.3 0.7 1 23 215 238 215 238 0.93 9 27 0.64 51 5.3 0.7 1 23 252 275 252 275 0.93 10 27 0.64 51 5.3 0.7 1 23 289 312 289 312 0.93 11 27 0.64 51 5.3 0.7 1 23 326 349 326 349 0.93 12 27 0.64 51 5.3 0.7 1 23 363 386 363 386 0.93 13 27 0.64 51 5.3 0.7 1 23 400 423 400 423 0.93 14 27 0.64 51 5.3 0.7 1 23 437 460 437 460 0.93 15 27 0.64 51 5.3 0.7 1 23 474 497 474 497 0.93 16 27 0.64 51 5.3 0.7 1 23 511 534 511 534 0.93 17 27 0.64 51 5.3 0.7 1 23 548 571 548 571 0.93 18 27 0.64 51 5.3 0.7 1 23 585 608 585 608 0.93 19 27 0.64 51 5.3 0.7 1 23 622 645 622 645 0.93 20 27 0.64 51 5.3 0.7 1 23 659 682 659 682 0.93 21 27 0.64 51 5.3 0.7 1 23 696 719 696 719 0.93 22 27 0.64 51 5.3 0.7 1 23 733 756 733 756 0.93 23 27 0.64 51 5.3 0.7 1 23 770 793 770 793 0.93 24 27 0.64 51 5.3 0.7 1 23 807 830 807 830 0.93 25 27 0.9 71 4.8 1.1 1 23 844 867 844 867 0.93 26 27 0.64 51 5.3 0.7 1 23 881 904 881 904 0.93 27 27 0.64 51 5.3 0.7 1 23 918 941 918 941 0.93
Sequence Information
- Coding Sequence
- ATGCACGGGACGGCCTCGCCTACGCACAGCTGCCGCGTGTGCGGACACACTGCGCCGTCTCTGGCGAAACTCCGCAACCATATGAAGAATCACCGCGAGCGTCAGAAGTGCGAACTGTGCGGGAAGAGCTTCCGCGACAGGAGCTCACTGCGGACGCATCTCTTCATCCACTTGGGCTGCAAGGAGTTCAGCTGCCCGCGCTGCGACAAGCGCTTCCTGTTCAAGAAGGCCATGGAGGTGCATCTGGTGACGCACGACGCGCACGCGCACCTGTACTGCTACGAGTGCGACCTGAACTTCAAGAACCTCATGTCGTTCAAACAGCACATGAAGTACAGTCTGAAGCACATCGACCCCGCCAAGCTCAAGTACGCGTGCCCGCTGTGCGACAAGAGGTTCCTGAAGGCCTCCCGCCTGCAGGAGCACAACCTGGCCGTGCACCTGAAGGCCACGCCCATCTCCTGCGCCGTGCCGCAGTGCAACTTCGCGTGTTCGTCTCGTCCTGTACTCCGCACACACATGCGCATGGTACATCGCAACGGTCGCGCGGTACGGAATCATGTGTGTGATGCGTGTGGGAAGGCCTACATGAGCAAGAAGACCCTGGAGGGTCACCTGCGCTCGCACACGGGCGAGCGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTACGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTACGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCTTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGACCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTACAACCACAACAAGCTGGTGCACGCCAAGGTACTGTATACACGGGTAGCAGGAGTAGGGCCCTACTCCTGCGCGCACTGCGCCTCCACGTTCGGCTACTCGGCCGCGCTGTGCGGTAGCAGGAGTAGGGCCGCTCGCACACGGGCGAGCCCTACTCCTGCACGTTCGGCTactatatatacagggtgtggcaCATTTAGCCATGTGCGCGACATGTACCCGCACTGCGCCCGCGTGGTGGGCCATAGCCTGCACAGAGCCAGCCAGCGTGCTCCTGGCTGCTTATGTATAGAGCACACGCTGCGCCTCAGCCACTAA
- Protein Sequence
- MHGTASPTHSCRVCGHTAPSLAKLRNHMKNHRERQKCELCGKSFRDRSSLRTHLFIHLGCKEFSCPRCDKRFLFKKAMEVHLVTHDAHAHLYCYECDLNFKNLMSFKQHMKYSLKHIDPAKLKYACPLCDKRFLKASRLQEHNLAVHLKATPISCAVPQCNFACSSRPVLRTHMRMVHRNGRAVRNHVCDACGKAYMSKKTLEGHLRSHTGERPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVRPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVRPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSTALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALYNHNKLVHAKVLYTRVAGVGPYSCAHCASTFGYSAALCGSRSRAARTRASPTPARSATIYTGCGTFSHVRDMYPHCARVVGHSLHRASQRAPGCLCIEHTLRLSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -