Njan025425.1
Basic Information
- Insect
- Noctua janthina
- Gene Symbol
- -
- Assembly
- GCA_963576755.1
- Location
- OY755080.1:4355787-4357471[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.8e-05 0.0022 19.0 0.3 1 23 132 155 132 155 0.94 2 10 2.7 2.1e+02 3.3 0.9 2 23 182 204 181 204 0.89 3 10 0.0025 0.2 12.9 3.5 2 23 227 248 226 248 0.95 4 10 0.0078 0.61 11.3 1.5 1 23 252 274 252 274 0.95 5 10 0.00031 0.024 15.7 0.7 1 23 279 302 279 302 0.90 6 10 0.012 0.93 10.7 0.8 1 23 309 332 309 332 0.93 7 10 0.00014 0.011 16.8 0.8 3 23 341 362 339 362 0.95 8 10 0.00024 0.019 16.1 3.3 1 23 368 390 368 390 0.98 9 10 8.1e-06 0.00064 20.7 2.2 1 23 396 418 396 418 0.99 10 10 9.4e-06 0.00074 20.5 4.2 1 23 423 446 423 446 0.97
Sequence Information
- Coding Sequence
- ATGATGAGGAAAGTGTTacatatgaatgtggatgaaaAAAACGATAGACTGTGGGAAggatatgGTGATCAAGAAGCAGCTGTTGTGAAACAAGAACTGAACTACATAGCACCTTCAGAGACTGTTGGTGAAAAACAAGAACCGATCGACAGGGCATCTACAGAAAGTATAGATGAAACACCAGAAACGATCATCATTACATCTATAGAAAGTTTACGAGGAAAACGAGAAACAAGCAACGATACATCTATAGAAAGTGAAAACAACTTAGAAAACATTAAACAAGAACCTAAAATTACACCGAAAACGGAACTTTTAAAACATCGAAATAGCATCACAGAAATTCTTCTTTACTCTAACGCGACACCCATAAGACGGTACGAAGGGATCGGATATAACTGTTCCTATTGTCCAGAACAGTTCGAAAGGCCTGCAGACCTGAAGAAACATACTCTAGAAAACCACAATAATATTGCAGAAGCAAACTTCATGAAGAAAATGAATATGTCCGAGTATGTCGTCAAAATAGATATAACTGCACTAAAATGCAAGCTATGCAACGACGACATGGATACGCTAAACAACTTAATACACCATCTTCAAAACGTGCATGagaaaaagatagacataaacTATACGAACCATATCTTTCCTTTTAAATTCAGTGACGATTTGCTCAGATGCATGTTTTGTGGCCACACCTTCACTAGGTTCAGAGGCCTCGTTGCACATATGCACTTACATTACAGAAATTACATTTGCACGATTTGCGACTCTGGATTCGTGAACCGAAACACGTTTACACAACATGCTTCACACCACAAAACAGGGACATTTGTTTGTGATTACTGTCCAAAAGTCTTCACTACTCAAGGAAATAAAAGATTTCACGAAAGAGTCGTCCACACTCACGGGAAACGTAAATATAAATGTGGTTATTGTAAGGAAATGTTTAAAGAACATGAACAAAAAGTAGCTCATGTGGCCTCCGTGCATAGTGCTGTAGCATTGAGACTAGCATGTCAAGCGTGCGACAGAGTATTCAACACAAGAAGGAAATTAAACACACACATAAAGAAAGACCATCTCATGGAGAAGTCACACAAATGTACACAATGCGACATGGCGTTCTATTCAACGACAAAGTTAAAAAGTCATATGATCAGCCATACTGGATTGAAAGAATATCAGTGTTCAGTGTGTCTGAAGTTTTTTGGCAGAAGGAAGACACTGAATGTTCATATGAAGACCCATGCTAAAAAGGTGTTCGAATGTGAACACTGTAACCAGAAATATACACAGAAAAACAACTTGAAAGCCCATCTGAAGTCTAAACATGGAATAAATGGTTAA
- Protein Sequence
- MMRKVLHMNVDEKNDRLWEGYGDQEAAVVKQELNYIAPSETVGEKQEPIDRASTESIDETPETIIITSIESLRGKRETSNDTSIESENNLENIKQEPKITPKTELLKHRNSITEILLYSNATPIRRYEGIGYNCSYCPEQFERPADLKKHTLENHNNIAEANFMKKMNMSEYVVKIDITALKCKLCNDDMDTLNNLIHHLQNVHEKKIDINYTNHIFPFKFSDDLLRCMFCGHTFTRFRGLVAHMHLHYRNYICTICDSGFVNRNTFTQHASHHKTGTFVCDYCPKVFTTQGNKRFHERVVHTHGKRKYKCGYCKEMFKEHEQKVAHVASVHSAVALRLACQACDRVFNTRRKLNTHIKKDHLMEKSHKCTQCDMAFYSTTKLKSHMISHTGLKEYQCSVCLKFFGRRKTLNVHMKTHAKKVFECEHCNQKYTQKNNLKAHLKSKHGING
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01085742;
- 90% Identity
- iTF_01062155;
- 80% Identity
- -