Njan019446.1
Basic Information
- Insect
- Noctua janthina
- Gene Symbol
- -
- Assembly
- GCA_963576755.1
- Location
- OY755070.1:6648629-6670007[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8 1.4e+02 3.9 0.9 6 20 12 26 6 28 0.86 2 14 0.091 7.2 8.0 0.4 2 20 34 52 33 54 0.93 3 14 1 82 4.6 0.5 1 12 206 217 206 226 0.83 4 14 0.6 47 5.4 0.1 1 19 627 645 627 645 0.98 5 14 0.00032 0.025 15.7 0.4 1 23 652 674 652 674 0.98 6 14 3.8e-05 0.003 18.6 0.6 1 23 688 710 688 710 0.99 7 14 1.8 1.4e+02 3.9 1.3 1 23 735 756 735 756 0.87 8 14 0.00033 0.026 15.7 0.5 3 23 764 784 762 784 0.96 9 14 0.0018 0.15 13.3 2.3 1 23 800 822 800 822 0.98 10 14 2.1e-06 0.00017 22.5 4.5 1 23 828 850 828 850 0.98 11 14 0.00079 0.062 14.4 5.2 1 23 856 878 856 878 0.97 12 14 1.3e-05 0.0011 20.0 0.4 1 23 884 906 884 906 0.98 13 14 0.00065 0.051 14.7 1.1 1 23 910 932 910 932 0.98 14 14 0.00029 0.023 15.8 0.1 1 23 940 963 940 963 0.96
Sequence Information
- Coding Sequence
- ATGGGAGGCCAGCCGTTGAATTGTCCACTTTGCTGCACTACGACTTTTAATTCTAAACAATCTCTACTTGAGCATTTGACTAATGCTTTACAGAATGTATATTGTCCTGTTTGTAACTACAAATGCAATTCGTTACCACACCTTGTAGAGCATTTGGCTCAGGATAATTGTCAGTCAGCTAGCAACGTACATACTATTATATTTGAGCGTCCATTAGATGAGGACGGCATTGAAAACTCATCAAATATTGGAAATTCTGGAATTAAAGTATATCAGAGTGAAATAAATCCTAATGGGAGCCACTTCACAACAGATCAAACTTACGAAGCTCATGTGGACCCAAATGAggcaaataaaatgtatgtggaACTATTTAGCAAACAGTTGAAACCATGCATACAGACACGGGAATTTAAATTGGTGAAAGAAAATGGAGAGAGCCGGTATATGATTGTCACTCAGGATGATTCCGATGTAGGAGGCACTATcgtgacaaaacaaaatactgaTGGAACCATATCACTGACTACGGTTAAAgAAATGAATCTGAAAGCAGAGAACTTAATCACACCAGACAGTGTACAAGAACATCAGGAAGACAATCAGGAGGAGATCTACAGCTGCAACACTTGCAAAGTGTCCTTCTCTTCAGTCATAGAGCACATTCAGAACTACCATAATGATCAGGATGTGGTTGTTGAGGAGCCAATGGAAGATGGTCAGACTGAGTCAATGCCTGAATACGATCCAATGGTGAATGAAGACTCATTGGTTACGACCGACAAGCAGACACCTCGGCGCGTCATCACCGATACGGGCGATATTGTGGAGGAACCACTCTTATTCAAATCTGATGATCAAATGACATCGTCGAATCCATTGGAGACAACACAAGACCcgaataaaacagaaaaaaaagaactgcgCGTCTTCACCAAACGTTTTCTGCAAGTGGATAAACTTTGCGACAGTGTCATCAAAGATGCCATCCAGAGTGATGCAAAAGATGatcgtggacaagaaaaaactAACTTTGATCAGATTGATACGGAAGTGAGGCAGTTAGGTGGATGGATGGCTCAAATAGaagatgaagaaaataaaagtgatttgtTGGATAATATTAATGACTCAAACTGCTATGAAGTACAAATTATGGAGGAAGAAGTACTAGTAGATAAACCGATAAAACGAGGAAGAGAAGAGGATGAACAAGGCTGGACTAAAGTTGAGGGTAATAGaggaaaaaaactgaaacaaatCAAGAAAGAGGTTTTTATTTGGAGCAAAGAGAAATTACCGAAACAGTTTGCTATCGCAAAATTGTTTAACAGTATGGGTTTGACtgatataaacaatattaaatatattaatcCATATAAGTTAAAAATTGAGGTTTCGACTGAGGAATGTGCGGGCAAGATATTGGACTGTCAGGAATTCCAAACCAAGGAGTGGAAAGTTTATAGTGCAATGGACGTAAACATTTCCTACGGTATTATACGGGATGTAGACCTCGAGCTGTCCGACGAGGAGGCATTACAAGCGATCAAGTGTCCTAATGATATTCAAATCGTAACATTAAAAAGACTTCAAAGGCGAGATGGAGAAGGCCAGTGGGTGCCTAGTGAGGTAGCCAAGAAGGTAGCTACAGCACAGAGACTAATGCGTAAAGCTAGTGCAGAATCCTTTCATCAATTCTGTGACAGTATGAGTGAGCTGGTATCTAGTAGCGAGTTGTGGAACAAAATGCGATGGCTCAAAGGATATCGTACTGGTAGAACTTGTTTGGATGCAGAGAGGGCTGATAAAAGCGGCCCGTACCACAAAGTGATCGTCAAAGAAGTGCCAACGGACAGCGGGTTCGCGATCAAGATGTACCAGTGCTTAGCCTGTGACATATCCGTCACCAACTTGGACGAGTTTAAAACACATCCGTGTAAAGTATtaaagtaTCCTTGCCTCTACTGTCCTGTGGCATATGAAAACTCGAAATCTCTGTGTGCACACATGAAAGCACACAAAGTGAAAACAGaaTCCATCGTCACTGGGCCAGTATCGTACGAATGTGGTGTATGCAGCACAGTCTTCCCTACCAACAAGTCTTTGAAACTACACAAACGGATGCATGATCCTATCAAATCACGGCCTATTGAGCCTCCGATAGAAAACACGGACGGTTCAGAAGTGAGTGAAGGCAGGTACAGATGTAATTTCTGCAACAAAATGATCCCCAATGACTACAAGACTATCCACCAGAATTCACACAAAACTTCGGAGAAAATGAACTGCGGGATTTGTAACAAGAAGTTCACATCTATGGAGTATTTGGAAATGCATACGAATGTACATAATGTGGATAAGGCGCCAATAAACAATCAAGATAAGAATTTACCTTACAATTGTTTGTATTGCAACAGAAGGTTTGCGAGGCCGCACGAGAAAGTGAAACATGAAAGGATACACACAGGTGAGAAGCCACACTCGTGCGAGATCTGCGGCAAATCGTTCCGCGTGTCGTACTGCTTAACGCTGCACATGCGCACGCACACCGGCGCACGCCCCTACGCCTGCCCGCACTGCGGCAAGAGGTTCAAAGCCCACAGCGTGTACAACCACCACCTGCTGACGCACTCGGAGGTGCGCGCCTACAAGTGCCCTTTTTGCCCCAAAGCGTTCAAGACTTCCGTGCAACTCGCCGGACACAAGAACTCGCATACCAAGCCGTTCTCTTGCCAACATTGTAATAGGCCATTTGCGTCCTTATACGCGGTGCGCGTGCACACAGAAACGCACGCTCGCCAGAATAACCTGAAGTTCTCTTGCGAGCTATGCGGCGCTAGCTACGCGAGAGCCTTCGCCCTTAAGGACCATATCAAGCAAGCACACAGTGAACAGGAACAGGCGCAGTCGCCGTCACGAACAattgctgatgatgatgactggttGATTAAACACAACCCGGATACGGATAGTAATCCGGCTCTCAATAAAGATTTGACGCATGAGATTGATCTGGGAATAACTGGCAACGAACTGATAGTTCCTTGA
- Protein Sequence
- MGGQPLNCPLCCTTTFNSKQSLLEHLTNALQNVYCPVCNYKCNSLPHLVEHLAQDNCQSASNVHTIIFERPLDEDGIENSSNIGNSGIKVYQSEINPNGSHFTTDQTYEAHVDPNEANKMYVELFSKQLKPCIQTREFKLVKENGESRYMIVTQDDSDVGGTIVTKQNTDGTISLTTVKEMNLKAENLITPDSVQEHQEDNQEEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPMEDGQTESMPEYDPMVNEDSLVTTDKQTPRRVITDTGDIVEEPLLFKSDDQMTSSNPLETTQDPNKTEKKELRVFTKRFLQVDKLCDSVIKDAIQSDAKDDRGQEKTNFDQIDTEVRQLGGWMAQIEDEENKSDLLDNINDSNCYEVQIMEEEVLVDKPIKRGREEDEQGWTKVEGNRGKKLKQIKKEVFIWSKEKLPKQFAIAKLFNSMGLTDINNIKYINPYKLKIEVSTEECAGKILDCQEFQTKEWKVYSAMDVNISYGIIRDVDLELSDEEALQAIKCPNDIQIVTLKRLQRRDGEGQWVPSEVAKKVATAQRLMRKASAESFHQFCDSMSELVSSSELWNKMRWLKGYRTGRTCLDAERADKSGPYHKVIVKEVPTDSGFAIKMYQCLACDISVTNLDEFKTHPCKVLKYPCLYCPVAYENSKSLCAHMKAHKVKTESIVTGPVSYECGVCSTVFPTNKSLKLHKRMHDPIKSRPIEPPIENTDGSEVSEGRYRCNFCNKMIPNDYKTIHQNSHKTSEKMNCGICNKKFTSMEYLEMHTNVHNVDKAPINNQDKNLPYNCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHIKQAHSEQEQAQSPSRTIADDDDWLIKHNPDTDSNPALNKDLTHEIDLGITGNELIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -