Njan025427.1
Basic Information
- Insect
- Noctua janthina
- Gene Symbol
- -
- Assembly
- GCA_963576755.1
- Location
- OY755080.1:4370675-4378894[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 9.2e-05 0.0073 17.4 0.9 1 23 91 114 91 114 0.96 2 23 0.17 14 7.1 0.1 2 23 143 165 142 165 0.96 3 23 0.03 2.3 9.5 0.2 1 23 213 235 213 235 0.95 4 23 0.086 6.8 8.0 1.6 1 23 240 263 240 263 0.96 5 23 0.29 23 6.4 1.4 2 19 271 288 270 293 0.78 6 23 6.6e-06 0.00053 21.0 2.5 2 23 301 323 300 323 0.96 7 23 9.2e-05 0.0073 17.4 0.9 1 23 398 421 398 421 0.96 8 23 0.12 9.6 7.6 0.0 2 23 450 472 449 472 0.96 9 23 9.8 7.8e+02 1.6 4.0 2 23 495 516 494 516 0.96 10 23 0.012 0.94 10.7 0.3 1 23 520 542 520 542 0.97 11 23 0.77 61 5.0 0.8 1 21 547 567 547 570 0.87 12 23 0.26 21 6.5 1.5 2 19 578 595 577 600 0.79 13 23 0.091 7.2 8.0 4.1 2 23 608 630 607 630 0.95 14 23 0.11 9 7.6 2.7 1 22 699 720 699 722 0.90 15 23 0.6 47 5.4 0.1 2 23 752 774 751 774 0.95 16 23 0.52 41 5.6 4.9 2 23 797 818 796 818 0.97 17 23 0.0047 0.37 12.0 0.1 1 23 822 844 822 844 0.97 18 23 0.17 13 7.1 3.5 1 23 849 872 849 872 0.92 19 23 0.062 4.9 8.5 0.9 2 23 880 902 879 902 0.93 20 23 0.00017 0.013 16.5 0.9 2 23 910 932 909 932 0.96 21 23 0.0018 0.14 13.3 2.1 1 23 938 960 938 960 0.95 22 23 3.8e-07 3e-05 24.9 2.2 1 23 966 988 966 988 0.99 23 23 1.9e-05 0.0015 19.5 1.9 1 23 994 1017 994 1017 0.98
Sequence Information
- Coding Sequence
- ATGAATCCAGTAACAGGCTCCTACTCACTGCATCCTCCAGATGTCAACGAGGCGACGTCAGACTTACCCAGTACTGGAACTATAACTATTGAAGTTCCGAAAGCAAATACTGAAGAAAAACCTAAACGGAAGAGAATAAAAGGAGTTCTTACTGAGATCGGTAAAGCAAGGATAGAAATGATTGAGGAACTGAAGAAACACCGCTCAAATCTTCAAGAAATTCTTACTTACTCCAATGCCACGCCTTTTCTTGGAATAAATTATCGAGGTTATATGTGTTGCTACTGTGATACACAGTATCCAGACCCTGCAGATCTGAAGAAGCATATTCGTGACAATCATCGGCGCTTGTACAGTGCTGTAACGCCTATTGAAAAGATTAGCAGAAAAGATGAGTTTTGTGTCAAGCTGGACTTAACGGATTTACGATGCACACTCTGCGACGCTGACATAGATACTTTAGAAAACTTGTTAGAACACCTAAAGAGTGAACACGAAAGGGGAATACACACGGACATTAAAAACCAATTCTTACCATTTAAGTTCAGTAGTGATGTCTTAAAATGTTGTTTGTGCCCAAGTATTTTtgataagtttaaaattttgcaaTTGCATATGCACACTCACTATAGAAATTTTATTTGCGAAGTGTGTGATATGGGTTATATTACCGGTGGTTGTCTCAAAAGGCACGCCCAGGCACACATAACAGGCGAGTTTAAATGTAGCTACTGCTCCAATACCTATGATACTGCAAGAAAGGTAAAAAGTCACGAAACTACCGTTCACATACACAAGTATCTGAGAAATAAGTGTTGGTACTGCAATAAGAAGTTTAATAATCATCAGAAGAGGGATGATCATGTGGCTGAAGTGCATGGGGTGCAAAGTAATCTGATTAAATGTAGTGCTTGCGATAAGACCTTTACTAGCAAAAAATCTCTGACTAGACACACTAGGAGGGATCATTTGATTGAGCGCAAGCACAAATGTACTGGAACTATAACTATTGAAGTTCCGAAAGCAAATACTGAAGAAAAACCAAAACGGAAGAGAATAAAAGGAGTTCTCACTGAAATCGGTAAAGCGAGGAGAGAAATGTGCGAGGAACTAAAGAAACATCGCTCAAATCTACAAGAAATTCTTACTTACTCCAATGCCACGCCTTTTCTTGGAATAAATTATCGAGGTTATATGTGTTGCTACTGTGATACACAGTATCCAGACCCTGCAGATCTGAAGAAGCATATTCGTGACAATCATCGGCGCTTGTACAGTGCTGTAACGCCTATTGAAAAGATTACCAGAAAAGATGAGTTTTGTGTCAAGTTGGACTTAACGGATTTACGATGCACACTCTGCGACGCTGAAATAGATACTTTAGAAAACTTGTTAGAACATCTAAAGATTGAACACAAAAGGGAAATACGCATGGACATTAAAAACCAATTCTTACCATTTAAGTTCAGCAGTGATGTCTTAAAATGTTGTTTGTGCCCAAGTGTttttgaaaagtttaaaattttgcaaTTGCATATGCACACTCACTATAGAAATTTTATTTGCGAAGTTTGTGATATGGGTTACATTACCGGTGGTTGTCTCAAAAGGCACGCTCAGTCACACATAACAGGCGAGTTTAAATGTAGCTACTGCTCCAATACCTATGATACTATGAGAAAGGTAAAAAGCCACGAAGCTGCCGTTCACGTTCACAAGTATCTGAGAAATAAGTGTTGGTATTGCAAAAAGATGTTTAAAAATCATCAGAAGAGGGATGATCATGTGGCTGAAGTGCATGGGGTGCAAAGTAACCTGATTAAATGTCGTGCTTGCGATAAGACCTTTACTTGCAAAAGGTCTCTGACTATTCATACTAAGAGGGATCATTTGATTGAGCGCAAGCACAAATgTATCATCAAATTAAAGAAAGAACCTGAACCAAAACCAAATAAACCGACAGCCAAGCCAAAGACGCCCGCTGGTAAAACAAAGCCTTCAGTAAGAGAAGAACTAGAAAAGCAATCGAATAACACGCAAATGATTATAATGTGCAGCAATGCGACCCCTTTCCTTCAAAAGATAGACACGGGGTACGTCTGCTGTTACTGCAGGGAACAATATCAGGACCCTGCTGATCTAAAGAAGCATAACCATGAAATTCATGGAGACAAATATGACCCAGTATCTCCAAACGTTATTATGAACAGCAGGAAATCTGAATTCTGCATCAAATTAGACATTACAGGCTTAAAATGTACACTCTGCAGCACAGACATTCCGTCTTTAGAGGCACTTAAAGATCATCTACAAAATGAGCACAAGAAGAAGATATTTACGGATATCAAGAATAAGATCATACCATTCAAGTTCGAAAGTGAAGATATCCGCTGCTGCATTTGTTCCAACGTATTCGAAAAGTTTCGGAAATTACAGGAACATATGCATTCACATTACAGGAACTTTGTTTGCGAGCAGTGCGATCTAGGTTTCGTGACCCTATTAAGTCTCAAAAGTCATGCAGAAAAACACAAATTAGGCGAATTCAAATGCCAGTATTGCCCCAAGATATATGATACACATCGAAAGAAAAAGTCGCACGAAAAAGCAGTGCATGTAACGGGATATTTGTTGAGCAGATGCGGGTACTGTAACGAGCGATTCACTAGTACCAAAAACAAGGATGAACATTTAGCCAAAGTTCACGGCGTTCAGTTACGTGCACTCAAATGCCAAGCATGTGACAGAACTTTCGAGAACAAAAGAGCTTTGACAATACACACGAGGAGAGATCACTTGATGGAAAGAAAACATAAATGCTCCCAATGTGAAATGTCATTCTTCAACGCTAGTAGTTTAAAAATGCACGCAGTCAAGCATTCAGGCTTGAAGGAGTTTCAATGTGACGTATGTCAGAAGTCTTACGCTCAGAAGAAGACTCTGACGCAGCATATGAGGACACATTCAGATGAGAGACGCTTTAAGTGCGAACGCTGCGAGCAGGCATTCGTAAAGAAGAGTAGTTTGAATACACATATGAAGAGTAGGCACTTagacaaacaatga
- Protein Sequence
- MNPVTGSYSLHPPDVNEATSDLPSTGTITIEVPKANTEEKPKRKRIKGVLTEIGKARIEMIEELKKHRSNLQEILTYSNATPFLGINYRGYMCCYCDTQYPDPADLKKHIRDNHRRLYSAVTPIEKISRKDEFCVKLDLTDLRCTLCDADIDTLENLLEHLKSEHERGIHTDIKNQFLPFKFSSDVLKCCLCPSIFDKFKILQLHMHTHYRNFICEVCDMGYITGGCLKRHAQAHITGEFKCSYCSNTYDTARKVKSHETTVHIHKYLRNKCWYCNKKFNNHQKRDDHVAEVHGVQSNLIKCSACDKTFTSKKSLTRHTRRDHLIERKHKCTGTITIEVPKANTEEKPKRKRIKGVLTEIGKARREMCEELKKHRSNLQEILTYSNATPFLGINYRGYMCCYCDTQYPDPADLKKHIRDNHRRLYSAVTPIEKITRKDEFCVKLDLTDLRCTLCDAEIDTLENLLEHLKIEHKREIRMDIKNQFLPFKFSSDVLKCCLCPSVFEKFKILQLHMHTHYRNFICEVCDMGYITGGCLKRHAQSHITGEFKCSYCSNTYDTMRKVKSHEAAVHVHKYLRNKCWYCKKMFKNHQKRDDHVAEVHGVQSNLIKCRACDKTFTCKRSLTIHTKRDHLIERKHKCIIKLKKEPEPKPNKPTAKPKTPAGKTKPSVREELEKQSNNTQMIIMCSNATPFLQKIDTGYVCCYCREQYQDPADLKKHNHEIHGDKYDPVSPNVIMNSRKSEFCIKLDITGLKCTLCSTDIPSLEALKDHLQNEHKKKIFTDIKNKIIPFKFESEDIRCCICSNVFEKFRKLQEHMHSHYRNFVCEQCDLGFVTLLSLKSHAEKHKLGEFKCQYCPKIYDTHRKKKSHEKAVHVTGYLLSRCGYCNERFTSTKNKDEHLAKVHGVQLRALKCQACDRTFENKRALTIHTRRDHLMERKHKCSQCEMSFFNASSLKMHAVKHSGLKEFQCDVCQKSYAQKKTLTQHMRTHSDERRFKCERCEQAFVKKSSLNTHMKSRHLDKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -