Njan025426.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Noctua janthina
Gene Symbol
-
Assembly
GCA_963576755.1
Location
OY755080.1:4361809-4369819[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.0059 0.46 11.7 0.1 1 23 92 115 92 115 0.93
2 18 0.13 11 7.4 0.0 2 23 144 166 143 166 0.93
3 18 2 1.6e+02 3.7 6.6 2 23 189 210 188 210 0.96
4 18 0.0024 0.19 12.9 0.9 1 23 214 236 214 236 0.98
5 18 1.6 1.2e+02 4.1 0.5 1 13 241 253 241 261 0.78
6 18 0.081 6.4 8.1 0.4 2 23 273 295 273 295 0.93
7 18 0.0001 0.008 17.2 2.2 1 23 302 325 302 325 0.98
8 18 0.0015 0.12 13.5 5.4 1 23 331 353 331 353 0.98
9 18 2.6e-07 2e-05 25.4 1.1 1 23 359 381 359 381 0.99
10 18 0.068 5.4 8.4 0.7 1 14 387 400 387 403 0.92
11 18 0.0082 0.65 11.2 0.9 1 23 473 496 473 496 0.95
12 18 0.0015 0.12 13.6 0.4 1 23 596 618 596 618 0.97
13 18 0.24 19 6.6 1.3 1 23 623 645 623 645 0.95
14 18 0.49 39 5.7 2.2 2 23 653 675 652 675 0.96
15 18 0.00044 0.035 15.2 1.8 1 23 682 705 682 705 0.96
16 18 4.5e-05 0.0036 18.3 5.7 1 23 711 733 711 733 0.98
17 18 2.7e-06 0.00021 22.2 2.0 1 23 739 761 739 761 0.99
18 18 1.8e-06 0.00015 22.7 0.5 1 23 767 789 767 789 0.99

Sequence Information

Coding Sequence
ATGTATGATATTGATAATGCCGCGTCTAATCCGCGaaaggttatgcagaggtGTAACCAAGAAACAGTGAACAAGAAAGTAGAAATCAAACCTTTAGAGCCAGCTGTATTAGTTATCGTAGGACCTGAAAGAAAAACCAAATTGCAGGTAAACGCTACGCCCAAACTGCACGTCGAACCGCATGTCAGTGAATTGGGGAAACATCGACACAACCTCGGACAAATCTTACAATATACTAACGCAACACCAATAATGCGTCGAGGAGGCGTTGGTTACATGTGCAGTTACTGTCTTCAAGAGTTCCCAGAGCCTGTAGACCTAAAGAAGCATACACTAGCAAATCACACCTCTAAATCAGACCCTACAATTAGGTACGCTAAAAGCCCAGGCATATCAGAATACAATGTCAAAATAGACATCACTAACCTCGAGTGTACGGAATGTGCGAAAACCATAGACAGTCTAGAAGATCTATTGTCCCATCTGCAAGATGAGcataaaaaaatgatatacACTGACATTCCAAACCATTTCATTCCTTTCAAATTTATAACAGATGATCTTACTTGCTGCCTATGTCAGAGTACTTTCGATAAGTTTAAAAAACTTCAAGAGCATATGCACTCACACTACAGGAACTACGTATGTGAAGAATGCGATTCAGGGTTCGTTACTCGGGGATGTTGGCTCAGACATCGCAGCACACACTTAAAAGGAGACTTCCCTTGCAGCTTCTGTCCGAAGGTCTACGATACCATGTTGAAGAAGCGGTCTCATGAGAGATGTAGCCATATTCACGCCGATATGCTTCCCAATAGATGCGCATTTTGTAACAAAGGCTTTAAAGAGTACTATGATAAAGAAATCCACATGTCTGAAGTCCACGGTGCTAAAGCATCACTGTACAAATGTAATGCTTGTGACAGGAGTTATAAAAGCAAGCGTAAACTGAGGATCCACGTCAAAAGAGACCATCTGTTAGAGAGGAGGCACAAATGTCTTACTTGTGACATGACATTCTTTTCTTCCCATGATGTTAAGAAACATATGATCACACATACGGGGGAAAGGAACTTTCAATGCGAAATTTGTCTGAAATCTTTTGGGAGAAAATCGACGCTTCAAAGTCATATGAGAATCCATAACAATGATCGACGATTTAAATGTGAATTTTGTGGGATGTCGTTTATTCAAAAGTaTAAACAAGCAAAACTGACTTCAGCTACGAACATCAAAATAGAGCCGAAAACTGAAGAAATGGGTACTACTGTACccaaacaagaaaatatacaaataaaacctGGGTCAGCACCTAAACCACGCATAAAGCGACTACTACACAAGCATCTCCACAATCTGAAACTAATCCTAGAATCTACGAATGCGACGATGATACTCAAACATGGAGATAAGGGATATTTGTGCTGTTATTGCACGGAAGCTTTCCAAGAGCCAATGAATTTGAAAGTACATACTTTAACGGAACATCAAAACGAAGACAAATTTTATGGCAACATAAAAGCCAAAGGACCAGCTAGGTTCTTAGTCAAACTGGACATCACGAACCTAAAATGTATGCTTTGCAGCGCTAACATAGATTCACTTGGAGATATATTCGTCCATCTGACAGACAAACATGATAAGAGCTTCTATACTGATatacaaaatcaaatatttcCCTTCAAATTTAATACGAAACAAATGAAATGCTGTCAATGCACTAGTGACGTCGTCTTCGCCACGTTTAGTGCATTACATGAGCATATGCACCAACACTACAGATACTTCGTTTGTGACGTGTGTGATGCTGGATTCGTCAATCATGATACTTTATCCAGCCATAAAGTCACCCACACGAAAGGAACCTTTGCCTGCCGACATTGTCCGGTCGTATTCGACAACGTGTACAAAAGAAGAAATCACGAAATTCGCCACAGTAAAGCTGGCAAATTAAACAAATGCCATTTTtgcaatgatttttttaaagattatagtACGAAGGAGATACATCTTGCTACAGTACACGGAGTTGCTCCAGCAAAACACAACTGCACTGCATGCGACAGGAGCTTTCCTTCTAATAGCTTCCTTAGCGCACATGTCAGACGGTTCCACTTGATGGAAAAGACTCACAAATGCTCAGAGTGCGACAGAGCGTTCTTCAGAGAAAGCCATCTAAAGAAACATACGCTGAGTCATACAGGGGCTAAAAATTTCAAGTGCGAAGTCTGTTCAAAGCAGTTTACTACTAAGTCTATTCTCACTCGGCATATGAGAATTCATAACAATGATAGGCGCTTTAAGTGTACAATATGTGAGCAGGCGTTTGTGCAAAAACCTAGCCTTAACTGGCATATGAAGAAGCATGTAGATACCAGCTCTATTTGA
Protein Sequence
MYDIDNAASNPRKVMQRCNQETVNKKVEIKPLEPAVLVIVGPERKTKLQVNATPKLHVEPHVSELGKHRHNLGQILQYTNATPIMRRGGVGYMCSYCLQEFPEPVDLKKHTLANHTSKSDPTIRYAKSPGISEYNVKIDITNLECTECAKTIDSLEDLLSHLQDEHKKMIYTDIPNHFIPFKFITDDLTCCLCQSTFDKFKKLQEHMHSHYRNYVCEECDSGFVTRGCWLRHRSTHLKGDFPCSFCPKVYDTMLKKRSHERCSHIHADMLPNRCAFCNKGFKEYYDKEIHMSEVHGAKASLYKCNACDRSYKSKRKLRIHVKRDHLLERRHKCLTCDMTFFSSHDVKKHMITHTGERNFQCEICLKSFGRKSTLQSHMRIHNNDRRFKCEFCGMSFIQKYKQAKLTSATNIKIEPKTEEMGTTVPKQENIQIKPGSAPKPRIKRLLHKHLHNLKLILESTNATMILKHGDKGYLCCYCTEAFQEPMNLKVHTLTEHQNEDKFYGNIKAKGPARFLVKLDITNLKCMLCSANIDSLGDIFVHLTDKHDKSFYTDIQNQIFPFKFNTKQMKCCQCTSDVVFATFSALHEHMHQHYRYFVCDVCDAGFVNHDTLSSHKVTHTKGTFACRHCPVVFDNVYKRRNHEIRHSKAGKLNKCHFCNDFFKDYSTKEIHLATVHGVAPAKHNCTACDRSFPSNSFLSAHVRRFHLMEKTHKCSECDRAFFRESHLKKHTLSHTGAKNFKCEVCSKQFTTKSILTRHMRIHNNDRRFKCTICEQAFVQKPSLNWHMKKHVDTSSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-