Njan025441.1
Basic Information
- Insect
- Noctua janthina
- Gene Symbol
- -
- Assembly
- GCA_963576755.1
- Location
- OY755080.1:4476457-4486929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 34 0.78 62 5.0 0.6 1 23 25 47 25 47 0.94 2 34 0.033 2.6 9.3 0.3 2 23 119 141 118 141 0.93 3 34 0.049 3.9 8.8 3.9 1 23 146 169 146 169 0.95 4 34 0.013 1 10.6 1.1 1 23 174 197 174 197 0.96 5 34 0.19 15 6.9 0.2 2 23 200 222 199 222 0.93 6 34 0.2 16 6.9 1.1 2 22 229 249 228 249 0.93 7 34 0.032 2.5 9.4 0.4 1 23 310 333 310 333 0.92 8 34 0.14 11 7.4 0.1 3 23 362 383 360 383 0.92 9 34 0.68 53 5.2 0.4 2 23 406 429 405 429 0.94 10 34 0.0011 0.085 14.0 0.6 3 20 436 453 434 457 0.90 11 34 0.12 9.2 7.6 0.6 1 23 462 485 462 485 0.97 12 34 0.0076 0.6 11.3 0.2 2 23 491 513 491 513 0.96 13 34 5e-05 0.004 18.2 5.0 1 23 517 540 517 540 0.98 14 34 0.0037 0.29 12.3 0.9 2 23 547 568 546 568 0.96 15 34 1.3 1e+02 4.4 0.3 1 10 574 583 574 587 0.88 16 34 0.17 13 7.1 0.8 1 23 622 644 622 644 0.95 17 34 0.33 26 6.2 0.0 2 23 672 694 671 694 0.89 18 34 0.00019 0.015 16.4 0.6 2 23 715 737 714 737 0.96 19 34 0.0014 0.11 13.6 4.4 1 23 742 764 742 765 0.96 20 34 7.9e-05 0.0062 17.6 0.4 1 23 769 792 769 792 0.96 21 34 0.27 22 6.5 0.3 2 23 795 817 794 817 0.95 22 34 0.24 19 6.6 1.3 2 20 822 840 821 845 0.91 23 34 0.012 0.91 10.8 2.9 2 23 890 912 889 912 0.93 24 34 0.0008 0.063 14.4 0.3 1 23 985 1008 985 1008 0.92 25 34 0.0085 0.67 11.2 0.3 1 23 1055 1078 1055 1078 0.93 26 34 0.14 11 7.4 0.0 2 23 1109 1131 1108 1131 0.94 27 34 0.016 1.3 10.3 2.3 2 23 1154 1175 1154 1176 0.95 28 34 0.0012 0.098 13.8 1.7 1 23 1181 1204 1181 1204 0.97 29 34 0.075 5.9 8.2 0.2 1 23 1209 1232 1209 1232 0.93 30 34 0.0024 0.19 12.9 0.7 2 23 1238 1260 1237 1260 0.92 31 34 0.0037 0.29 12.3 0.3 2 23 1268 1290 1267 1290 0.97 32 34 0.26 20 6.5 0.0 2 23 1297 1318 1296 1318 0.95 33 34 5.3e-06 0.00042 21.3 0.6 1 23 1324 1346 1324 1346 0.92 34 34 1.8e-06 0.00014 22.8 1.4 1 23 1352 1375 1352 1375 0.97
Sequence Information
- Coding Sequence
- ATGAGAAGACGACGGAACCTCCAAATTCTATTCAACAACACATCTATTATACCTTTTAAATGGCGCGGGAAGTACCTCTGTTTCTATTGCAGCAAAGACATAGCCGAGTATACAGAGTTAAGGAATCATACCAAAGCACATGGCAACTGTTCTATAAAAGACCATtccttaaaagttttaaaaggaGGGAAGAACATGGAAATAAAAGTAGACATCTCTTGTATTTCTTGCGAAGTTTGCGCAGAAACCTTACCGTCTTTCGATGAAATCATTGctcatttgtttgacaaacaTGCTCTGGAGTACGACAAAGGAGTAGAAATGGCTATCGAAGAGTATAAACTTGCTAGTCTTAGTTGTACAGCATGTGATGAAACATTCACGTACTTCGGTTACCTAGTTTCACACGTCAACAATAATCACCCCAAAAACTGCCACATTTGCGAGAACTGCAGTCAGAAATTCAACAAAAGAAGAGATCTCTTTTCTCACGTGAAAAACTACCATCGAGAAGGAGGATACAAATGCGAAATGTGCCCTCAAGTCTTCAattcaatgaatattttaagaaaacacaGAAACAATAGGCATTTGACTCGATGTAATATATGCAATTTGAAACTACCGTCAGCTTCTATGAGACAAAAGCATATCGACTTAGAACACCCAGACGACGGGTCTTTGCAATGCGATGCTTGCTTCAAGGAGTTCCATACGAAACGAGGCCTCAAGATGCATGCAAGGAAATGTAAAGGGGAAGAGATTTTCGGAATAGCGATCAAAGAAGAAAACTCTGCCATGGACCTAGATTTAGACCAAAATTACGAGGATCCTGTCAAAAGACCTTGCGTCAAACAACTTCGAGAAAATATAGTCACTATCATTAATATGTCGACTGCAATACCTTTCAACTTTTATAAGAATAAGTTCAACTGCTTTTACTGCTCCAAAGATTTCGGCGATTCAGATTTGATGAGAGAACACACGGTTATAGAACACCCCGTATGCGATGTTAACGAGAAATGTATAAGGAAGTGTCGGGAATCAATATCTTGCGTCAAAATCGATATTTCGTCACTCGCTTGCAAAGTCTGCTTCGAGTCTTTGACAGACTTGGACTATCTAATCGATCATTTGATCGAAAAACACGATGCTAAATACGACAAATCGATAACTACATGTCTACAaccttataggctgattaaaGACAACATGGTCTGTCCACACTGCCCCAACGAAGTATACAATTTCTTCGGATCGCTTCTTAAACATATCAACCTGAAACATACAAATAACAATATCATTTGCGTGTACTGCGGTCAAACGTTTCGCAGAGATCAAAACTTACGAGTTCACATTTGGCGGCATCACAGAGCTGGGAGGTTTAAATGCACCATATGTAATGCTGATTGCAATATTCCGTCTCGTCTTTACATGCATATGGCTCGCGCTCACGGCGTCAGAGCCGCTAAATGCCCGAAATGTCCCGATTCTTTTGCCACGCAATACGAAAGGCAGAAACATTTGATCGTCGCCCATAATACGGGTCACAAATGCACGTATTGTGGGAAACTGTTCACAAGAAACTCCTTTATGAATAATCATATAAGAAGAACGCATATGAAAGAGAAGACCAAAGAATGTTCTGTTTGCAATGCGAAGTTCTTTAATACGGTTTTGTTGAGAAGGCATATGGTGAAGCATAGCGGGCAGAAGATATATAGTTGTGACGTGTGTGGGGAACGGTTTCACTGGCATTTGGAAACAGAGGTGACAAAGCACAGTGCTAGTTATCTAAGGAGGCGAAATCTGCAAATATTGCTCAACCACACAACGTTGATACCTTTTAAATGGCGCGGCAAATACCTCTGCTTTTATTGCGGAGATGATACGAAGACGCCCGATCGTCTCCGGAAACACACGAAAGCTCACGGACCTTGCAGTGATAGGGACAGAGCTATAAGACTAGTTAAATCAGCTGATGTAGAAATCAAAATAGATGTTTCCGATGTTAGCTGCGAGATTTGTTCAGAATCTTTTCCGTTTTTAGACGAAATCATCGACCATTTGATTTTCAAACACCAATTGCCTTATGACAAAGACATTGACATATTCCTATCAGCCTACAGGTTATTAGATCTACAATGTCTCCTCTGCGATAAAAGCTTTAATTACTTACGTAAATTAATAAGCCATATGAATGTCTCTCATCCGAATAACAGCTATGAGTGCGCTAAATGTACAAAGAAGTTTAATAAAAAGAGGGATTTAGATTCGCATATAAGATTCCATCATAAGACATGCCATCCTTGTACCAAATGCGATGAGAAGTTTCCTACCAATGCAGCGTTACAAGTTCATAGGTCTACCGCTCATTCTTCGACCTGCAACATATGTTTTCAAGTCTTTGCGTCTGATGGAAAGAGGCTAGCTCATCTAAAATCGGATCATGTCACTGAAAACCAATGTGGATTCTGCAATAAAATTCTAACAACTAAACAAGCTTTTATAAGACATGCCGCAAATTGCGAACATAAACCAAACGAAGAATCCATCATAATTGATGAGGAAGACAAAAAGATTTCTgttaaagaaataagaaaaggtTTAGCAGCTATCTTTAATATAACTACAGCACTTCCTTTTAAATTCTTCATGAACAGGCTGAGATGTTTCTACTGCACGAAAGACTTTAATTCTTGCGAGGATTTAAAGGAGCATACGTTGAACGAACATCCTCATTGCGATATATCTTTTAAATCTATGAGGTTAAGGAACAGATATGATGGTGTTCAAATCAAAGTTGACACTTCGGCTTTGTCTTGTAGACTGTGTCATATCTCCTTGCAGGACTTGAACGATGTGGTCGACCATTTGAGCAAAGAGCATAAGGTGAAATGCGACTTTTCTGTGGAGAGTAATCTACAGCCTTACAAACTGATTAAAGACAACTACCCATGCCCTATTTGTGGTGAAGTTTATAGATACTTTGGGCTCCTACTTAAGCATGTTAGTGCGTGTCACAGTgGTACAAAATTCAATACCGTGGAGGACAAATGTAAGAAAATGGAAGCCGCCCGAAAGCTATTGATAAAACGACGCAATGTCGAATATGTCTTACAGTACAGCAATGTTACACCCTTCATGTGGCATAAAGGGAAATATAAATGCTTTTACTGCAACGAAACTACGAAAGACCCTGGCGTACTTCGAGAACACACTTCCGAGGCACACCAATTCGCTAACCTAGAACTCGTTGTGTTCGACAGaactaaaaataacagaaataaggATGCTGCCGTCAAAATTGATGTTACTGACTTAAGTTGCAAGCTTTGTCCCCAAGCTGTGATGAATTTAGAAGAGCTGATACACCATTTGATCATCGCACATGATGCGGAATATGATGTAAGCGTCCCAAATTGTCTACTACCCTTTAAACTAGACAAGGATCAACCTACATGCCCAACTTGCAACATGAAATTCGTTTTCTTCGAATATCTGTTACGTCATGCGAATAAACACCATCTATCCCATCACTATATTTGCGATGTCTGCGGCACCAGTTTCCAAGGAGAAAATCATTTGAAAATGCACTATAGGTATTATCACAGAGAGGGTGGCTATACATGCGAGTATTGTGGAATCAGTCTTGCTACATTATCCAAAAAGATCTTACACGAAAAGAACGTGCATTTAGTAAACCTTTCGACCTGCCCACATTGTCCAGAAACTTTTAAGAGTCCGTACTTAAAGAAGCTTCACTTGGCTAACGTACATGAGGTAGAAGAACTTAAGATAAAGTGTCCGTTCTGTTCAAAAGTTTATCCACAAGAATCGATAATGTCACGGCATATGAGAAGGGTACATTTAAGAGAAAAGAACGTAGAATGCGAAGTCTGTGGAGACAAATTTTTTGGACCTTACGATGTCAAATTACATATGGTGAAACACAATGGCGAAAAGAAATTCGTTTGCTCTGTCTGTGGGAAGAAATTCTCCAAGCGGAGTAATTTAAACTCTCATGCTGTGTTACATACTAAAGAGAAAGATTACGTATGTGATGTTTGCAATAAGGCGTTTGCGCACCAAACGAATTTGCGAATGCATATCCGTAACAGACACAGTCGCTTCGACCTAGCTCCCATTGTTGACGAAATCGATGAAACCGATATGGTGCAAATGGAGATAATTCAGGAAGAATTAGACGGAGAAGTAACAGGGCAATATATTGAATGA
- Protein Sequence
- MRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDIAEYTELRNHTKAHGNCSIKDHSLKVLKGGKNMEIKVDISCISCEVCAETLPSFDEIIAHLFDKHALEYDKGVEMAIEEYKLASLSCTACDETFTYFGYLVSHVNNNHPKNCHICENCSQKFNKRRDLFSHVKNYHREGGYKCEMCPQVFNSMNILRKHRNNRHLTRCNICNLKLPSASMRQKHIDLEHPDDGSLQCDACFKEFHTKRGLKMHARKCKGEEIFGIAIKEENSAMDLDLDQNYEDPVKRPCVKQLRENIVTIINMSTAIPFNFYKNKFNCFYCSKDFGDSDLMREHTVIEHPVCDVNEKCIRKCRESISCVKIDISSLACKVCFESLTDLDYLIDHLIEKHDAKYDKSITTCLQPYRLIKDNMVCPHCPNEVYNFFGSLLKHINLKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRAGRFKCTICNADCNIPSRLYMHMARAHGVRAAKCPKCPDSFATQYERQKHLIVAHNTGHKCTYCGKLFTRNSFMNNHIRRTHMKEKTKECSVCNAKFFNTVLLRRHMVKHSGQKIYSCDVCGERFHWHLETEVTKHSASYLRRRNLQILLNHTTLIPFKWRGKYLCFYCGDDTKTPDRLRKHTKAHGPCSDRDRAIRLVKSADVEIKIDVSDVSCEICSESFPFLDEIIDHLIFKHQLPYDKDIDIFLSAYRLLDLQCLLCDKSFNYLRKLISHMNVSHPNNSYECAKCTKKFNKKRDLDSHIRFHHKTCHPCTKCDEKFPTNAALQVHRSTAHSSTCNICFQVFASDGKRLAHLKSDHVTENQCGFCNKILTTKQAFIRHAANCEHKPNEESIIIDEEDKKISVKEIRKGLAAIFNITTALPFKFFMNRLRCFYCTKDFNSCEDLKEHTLNEHPHCDISFKSMRLRNRYDGVQIKVDTSALSCRLCHISLQDLNDVVDHLSKEHKVKCDFSVESNLQPYKLIKDNYPCPICGEVYRYFGLLLKHVSACHSGTKFNTVEDKCKKMEAARKLLIKRRNVEYVLQYSNVTPFMWHKGKYKCFYCNETTKDPGVLREHTSEAHQFANLELVVFDRTKNNRNKDAAVKIDVTDLSCKLCPQAVMNLEELIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPTCNMKFVFFEYLLRHANKHHLSHHYICDVCGTSFQGENHLKMHYRYYHREGGYTCEYCGISLATLSKKILHEKNVHLVNLSTCPHCPETFKSPYLKKLHLANVHEVEELKIKCPFCSKVYPQESIMSRHMRRVHLREKNVECEVCGDKFFGPYDVKLHMVKHNGEKKFVCSVCGKKFSKRSNLNSHAVLHTKEKDYVCDVCNKAFAHQTNLRMHIRNRHSRFDLAPIVDEIDETDMVQMEIIQEELDGEVTGQYIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -