Njan011451.1
Basic Information
- Insect
- Noctua janthina
- Gene Symbol
- -
- Assembly
- GCA_963576755.1
- Location
- OY755061.1:4894751-4897030[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-08 5.6e-05 23.4 0.0 1 38 12 50 12 55 0.91 2 2 0.45 8.2e+02 0.5 0.1 17 25 106 114 104 114 0.88
Sequence Information
- Coding Sequence
- ATGGATGACCCCAACAAGAAGAACAGAAAATACTCGGAGACCGATCTCAAAACCGctgttgaaaatgttttaagttcAACAATGACAGTTTACAGAGCTTCGAAAGAGTTTAAGATTCCATGGTCGACATTAAAAGAGAATGTGACGAAGTACAAAACTCTACGAGAGGGTAATCAAGATGCACAGATCGTAATGTCCAAGATAGGAGGGCCGTTTGCGTTACCTGTTGAAATAGAACAAAAGTTACTGGCCTATATTATTGAGATGCAAGAACGTGGTTTTGGTCTTACAGTTACCAAAATAAAGCAAATAGCATTATCTTTAGCAAAAGCTGCGAACATTTGCTGCACATTCAATGACAAAAAGGGATCTGCAGGTTGGAATTGGTGGGTGAAGTATAAAGAACGCTACGGGTTGTCTTTGCGAACACCGGAAAATCTTTCAGCAGAAGATGCAGCTTCTAAAAATGGAGCAGACTGGATTTCTTGTTCCTGCTGCTCTAAAACGTACCACGTACATTGCCAAAGTCAAGAATTTGAGGCTATTGAGACGATTTTTAAGTGTGATATGTGTTGCGTCGAAGAATAA
- Protein Sequence
- MDDPNKKNRKYSETDLKTAVENVLSSTMTVYRASKEFKIPWSTLKENVTKYKTLREGNQDAQIVMSKIGGPFALPVEIEQKLLAYIIEMQERGFGLTVTKIKQIALSLAKAANICCTFNDKKGSAGWNWWVKYKERYGLSLRTPENLSAEDAASKNGADWISCSCCSKTYHVHCQSQEFEAIETIFKCDMCCVEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -