Basic Information

Insect: Noctua fimbriata
Gene Symbol: ush
Assembly: GCA_905163415.1
Location: LR990928.1:2545992-2549609[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0085 0.77 11.3 0.2 1 20 134 153 134 155 0.94

2 9 0.0001 0.0095 17.3 0.9 1 23 192 214 192 214 0.98

3 9 0.065 5.9 8.5 0.6 3 21 245 263 244 264 0.92

4 9 0.023 2.1 9.9 3.9 2 21 506 525 505 526 0.95

5 9 0.0082 0.74 11.3 0.2 3 20 555 572 553 574 0.91

6 9 2.1 1.9e+02 3.8 0.0 2 23 602 623 601 623 0.93

7 9 0.01 0.93 11.0 1.3 1 23 629 651 629 651 0.99

8 9 0.54 49 5.6 0.7 1 23 690 713 690 713 0.95

9 9 0.22 20 6.8 0.7 2 20 748 766 748 768 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0085	0.77	11.3	0.2	1	20	134	153	134	155	0.94
2	9	0.0001	0.0095	17.3	0.9	1	23	192	214	192	214	0.98
3	9	0.065	5.9	8.5	0.6	3	21	245	263	244	264	0.92
4	9	0.023	2.1	9.9	3.9	2	21	506	525	505	526	0.95
5	9	0.0082	0.74	11.3	0.2	3	20	555	572	553	574	0.91
6	9	2.1	1.9e+02	3.8	0.0	2	23	602	623	601	623	0.93
7	9	0.01	0.93	11.0	1.3	1	23	629	651	629	651	0.99
8	9	0.54	49	5.6	0.7	1	23	690	713	690	713	0.95
9	9	0.22	20	6.8	0.7	2	20	748	766	748	768	0.92

Sequence Information

Coding Sequence: ATGCGGGCTAGCTTTCAACGAATACATGAGTCGCATGTTTCTCTCTTGTACGAACGCAATGACATGTTTATAAAGACAAAGGgtgaGGACGAGGAATGGGGAAACGAGAGCGAGGCGATGCCGGGAGAACCTCGCACACCGAGCTCAGAGGGCGAACGGGCCGCTTCCAGCGGAGGCGTCTCGCCTGCGTCGGGGGGATCGCCTGCCGCCTCGCCACCTCGCTTGCGCCTCAACACCAGTCTTGCCACAGACCCCGCGCTGGCCCCGCAGGCAACTGCGCTCAAGCATGAGCCACCCTCGCCGTCTCCACCGCCTCCACCTGCGCCGCAAGCAAGAGACTTCCTCGCCATAACTGCGGCCGCCTTCCCAGGGCTGTTTCCTGCGACTGGTCCACCCGGCTACATATGCAAGCCATGCGGCATTCGCTACTCGTCTCTAAGTACATTGCAAGCCCATCAAGAACATTACTGTTCGAACAGACTGCCGAAACCTGCAGACCCGAATGCTACGGCCGATCCAGCCGTAGATGAGTCCAGCAGTGAAGCAAAAACTCCCCGTCCTGCAGGAAAGCAATATGCTTGCACTTACTGCTCGTATAGTGCTGATAAGAAAGTTAGCTTAAACCGCCACATGAGGATGCACTCCTCATCTCCGGTCAGCAGTGGAACCCCAGCGCCGACGCCGACCTCTAACGGAGAAGTGACGGAAGGGCCACCGGTACAGGATCGTTACTGTGCCGATTGCGATATTCGCTTTAGCTCTATTAAAACTTACCGAGCGCATAAACAACACTACTGCAGCACAAGACAAGTTGTGAAACAAGCCTTAGCTGCGGCCCGGGGGGGCTCTGCCACGTCAGGGTCCGCGCCGCCCTCGCCTGGAGCCACGCCTCCAGCACAAAACCAGAACCAGTACGCACTGGCGTTACCCACGAATCCCATTCTCATAGTGCCCTACTCGTTATTACGGGGTGCTAGTACTCTCCCAGGTACGACACTGCCCGACCCAGATACGCCATGTTTTCTGTTACCAAATGGAACATTTCAACCAATCAGTCGGGCACTGTCAAACATGAACGCGGAAGGAAAAGAAAATGAGGTTTTAAAATCCGCCAATCGGCCACGAGAGCCATCAAGAGATGGTGCGACCCCTTTGGATCTCAGTGTACGACGGTCACCGGAATCTGTGgtgactgatgagcatgagaaAGAGAATAGACTTCGGTCTACGACCCCCGAGCAAATCGTATGCGCACCTTCGCTCCCAGGATCACCAGGAACGCCATCTCCGTCTCGACGGTCTTCTTCTCCAAGTGCAGAAAGTTCACCAAAGCGAAGGAGATTAAACTCTAGAGGGCCAACTCCCAAACCTCCGAGTGTACCGTCGCCTCCAGAAGAAAAATACACTCCAATCATTCCTCCTGCGATTCTGCCTCCAGCTCTAGCATTACGACTCGCGTCTGAGTTACCAATCACTGCGGCATCGCCCCAAGTGCTTGTGAAGCAGGGGGTGTCAAAGTGCAAAGAGTGCAACATTGTTTTCTGTAAGTACGAGAACTACCGGATCCACAAGCGGCACTACTGCTCGGCAGGTGGTGGGGAAGAGCGCGCGAGCCCTGCGCCGCCGGAGCCCGGTCCACCACCACAGTACCGTCAGCTGATCTGCCTGGCGTGTGGAATCCACTTCAGTTCGCTGGACAACCTGACGACTCATCAATCTTTTTACTGTACAAAGCGGGAGACTCGGTCTCCCCGAAGCGTTCCTGAGGCTCCACGACCTACATCAGGGTCTGAGGGTGGGTGGAAGTGCCCGTGTTGTGACGTGGTGTCGCCGACGGCGGCGGCTGCGCAGCGTCACATGGACGCGCACGCCGGAGTCAAGGCGTTCCGCTGCACCATCTGCCGGTATCGGGGCAACACGCTCAGAGGCATGCGCACTCATATACGCATGCACTTCAACAACAAGAAACCGGCTGATTTACAGGAGGAAAGCTACATCGCTTGCGTTCTAGAAGAGGACAGCCGTGAGGCAACATCCCCAAGCCCAGCAGTGGGCGGAGAACGCGTCCACCGCTGCGGTAGCTGCGCTTACACCTCCACGTACCGAGGCAACGTCGTCAGACACGCCCGCCTGGTCCACGCAACCGATGAACCGGAGGAGGAACAAACCTCTCCTGTTCCTCCCCCAACCACAGTCGACATCAAGAAGGAACCAGACACAGAACTAGAAGAGACCCCAAACTATTGCAAGTCTTGCGATATTTCCTTCAAGTATGTCAACACTTATAAGGCACATAAGCAGTTTTATTGTACTGCTAATAATCAGGACGCGACGGCTAATAACAACGTGCCTACACCTGCGTCAGGAAGGGTCAGTGACACGCCTGTACTATGA
Protein Sequence: MRASFQRIHESHVSLLYERNDMFIKTKGEDEEWGNESEAMPGEPRTPSSEGERAASSGGVSPASGGSPAASPPRLRLNTSLATDPALAPQATALKHEPPSPSPPPPPAPQARDFLAITAAAFPGLFPATGPPGYICKPCGIRYSSLSTLQAHQEHYCSNRLPKPADPNATADPAVDESSSEAKTPRPAGKQYACTYCSYSADKKVSLNRHMRMHSSSPVSSGTPAPTPTSNGEVTEGPPVQDRYCADCDIRFSSIKTYRAHKQHYCSTRQVVKQALAAARGGSATSGSAPPSPGATPPAQNQNQYALALPTNPILIVPYSLLRGASTLPGTTLPDPDTPCFLLPNGTFQPISRALSNMNAEGKENEVLKSANRPREPSRDGATPLDLSVRRSPESVVTDEHEKENRLRSTTPEQIVCAPSLPGSPGTPSPSRRSSSPSAESSPKRRRLNSRGPTPKPPSVPSPPEEKYTPIIPPAILPPALALRLASELPITAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSFYCTKRETRSPRSVPEAPRPTSGSEGGWKCPCCDVVSPTAAAAQRHMDAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYIACVLEEDSREATSPSPAVGGERVHRCGSCAYTSTYRGNVVRHARLVHATDEPEEEQTSPVPPPTTVDIKKEPDTELEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDATANNNVPTPASGRVSDTPVL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00148050;
80% Identity: -