Nfim015373.1
Basic Information
- Insect
- Noctua fimbriata
- Gene Symbol
- znf711
- Assembly
- GCA_905163415.1
- Location
- LR990933.1:654677-656107[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.8e-05 0.0017 19.7 3.6 2 23 164 185 163 185 0.96 2 10 1.3e-06 0.00012 23.3 1.0 1 23 191 214 191 214 0.97 3 10 1.3e-06 0.00012 23.2 0.9 1 23 223 245 223 245 0.98 4 10 0.00048 0.044 15.2 1.2 3 23 253 273 251 273 0.97 5 10 0.00089 0.081 14.3 3.3 3 23 281 301 279 301 0.93 6 10 3.8e-06 0.00035 21.8 1.4 1 23 307 329 307 329 0.98 7 10 0.00015 0.014 16.8 4.1 1 23 335 358 335 358 0.95 8 10 0.0051 0.46 12.0 0.6 2 23 389 411 388 411 0.95 9 10 5.3 4.8e+02 2.5 0.4 1 17 417 435 417 442 0.81 10 10 0.00034 0.031 15.6 0.6 1 23 448 471 448 471 0.91
Sequence Information
- Coding Sequence
- atgaatgaaaatcTGTGTAGATTGTGCTGTCAGAATGAAGCTATTTCCTACATTTTTAGTAAAGAAATAAACGAAATCACATTAAGTTctaaaataatgtattgttgttcaaatttaaatattaaagacgGGGATGGACttccatcgtttatttgtgaTAGCTGCGAAATAGAGCTCGCAGCTTGCTACCAATTTGTACTAAAGTGCGAAGCTTCTGAAAAGAAGTTGAGATCTCAAgcttttgaaataataacacaaatcaCCTCAGATTTGGACGACTGCTCGCCGGACATTAAAGTAAAACTAGAATTAGATGGAAACAGCGACAATTGTCACCTTTTTGAAGATTTACGAAACGATGATATTAACCTTACACAAATACgacgaaataaattattagaaattaaattggaaagTGTAGATCCTAAGACAGCCACCAAAAGAAATCGACAAAAACAAagatctaaattcaaaaatctcAAGTCATGTACTTGCTTAGTTTGCGGCCGAACATGTGCTAACCCATCAACATTTAAAGCACACATGAGATCACACACTAATGAGAAACCATACTCTTGTCCTTCATGTGATAAGAAATACAAAGATAGTGGTACTCTCAAACGGCACATGGCAAGAAACCATATGCAACAGAAGCGGCAGCGTAACTTCATTTGTGAAAACTGTGGCAAAGGCTTCTTctctaaaaataatgtgaagATTCACATGCGCACACACACTGGAGAAACACCATATGGTTGCTCCTTGTGCAGCCTTAGGTTCACACAGATCAGTGCATTACAAAGACATAAAAAACGGCACACTGGTGTGAAGGATCACTTGTGCACAGCTTGTCCAAAGAGATTTTGTACTAAGGAGGAACTAAAAAGTCATCTCTTGGCACACAGCACTGAGAAAAAGTATTCCTGCCCTCTGTGTAATGTATTGTTTAAGTACCAAAACAATTTGAGGAAACATATGAGATTGCATTCTGAACCTAACAGATTTGTGTGTAACCACTGCGGACGTACATTCAGTGTTAAGGGGAACCTGAAGTGCCACATTGACAAGCAACATTCTGAGAAATCAGGTCACTGTACCGTTTGTTCAAAAAATGTTGCCAATATAGAGGTTCACATGTGGAGACATACAGGACAGAGACCACTGAAGTGTGAGCTCTGTACAAGCAGCTTTTATGAACTTAAGGCTTTAGCTCGTCACATGAACTATAGACATAAGAAAACTGATAAATATAAGTGTACATTTGAAGGATGTTTAATGACATTCCCATCGAGACCAATGCTGGACTTCCATACTGCTAAGCTTCACAGTACCCACATCCCATTTCCATGTGACAGGTGCACAAGAGCATTTTACAGGAAGAATGATCTTGCCAGACATAAAATTGGTACACATAAAGAGAGACTCATTTAA
- Protein Sequence
- MNENLCRLCCQNEAISYIFSKEINEITLSSKIMYCCSNLNIKDGDGLPSFICDSCEIELAACYQFVLKCEASEKKLRSQAFEIITQITSDLDDCSPDIKVKLELDGNSDNCHLFEDLRNDDINLTQIRRNKLLEIKLESVDPKTATKRNRQKQRSKFKNLKSCTCLVCGRTCANPSTFKAHMRSHTNEKPYSCPSCDKKYKDSGTLKRHMARNHMQQKRQRNFICENCGKGFFSKNNVKIHMRTHTGETPYGCSLCSLRFTQISALQRHKKRHTGVKDHLCTACPKRFCTKEELKSHLLAHSTEKKYSCPLCNVLFKYQNNLRKHMRLHSEPNRFVCNHCGRTFSVKGNLKCHIDKQHSEKSGHCTVCSKNVANIEVHMWRHTGQRPLKCELCTSSFYELKALARHMNYRHKKTDKYKCTFEGCLMTFPSRPMLDFHTAKLHSTHIPFPCDRCTRAFYRKNDLARHKIGTHKERLI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00928948;
- 90% Identity
- iTF_01532385; iTF_01064008; iTF_01062129; iTF_00712215; iTF_01064921; iTF_00685728; iTF_01534209; iTF_00928948; iTF_01085660; iTF_01533309; iTF_01535190; iTF_01084512;
- 80% Identity
- -