Basic Information

Insect: Noctua fimbriata
Gene Symbol: -
Assembly: GCA_905163415.1
Location: LR990940.1:6748367-6764759[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.3 1.2e+02 4.3 0.9 6 20 12 26 6 28 0.86

2 14 0.068 6.2 8.4 0.4 2 20 34 52 33 54 0.93

3 14 0.78 71 5.1 0.5 1 12 206 217 206 226 0.83

4 14 0.45 41 5.8 0.1 1 19 359 377 359 377 0.98

5 14 0.00024 0.022 16.1 0.4 1 23 384 406 384 406 0.98

6 14 2.9e-05 0.0026 19.0 0.6 1 23 421 443 421 443 0.99

7 14 1.3 1.2e+02 4.3 1.3 1 23 468 489 468 489 0.87

8 14 0.0003 0.027 15.8 0.3 3 23 497 517 495 517 0.96

9 14 0.0014 0.12 13.8 2.3 1 23 533 555 533 555 0.98

10 14 1.6e-06 0.00015 23.0 4.5 1 23 561 583 561 583 0.98

11 14 0.00059 0.053 14.9 5.2 1 23 589 611 589 611 0.97

12 14 1e-05 0.00091 20.5 0.4 1 23 617 639 617 639 0.98

13 14 0.00048 0.044 15.2 1.1 1 23 643 665 643 665 0.98

14 14 0.00022 0.02 16.3 0.1 1 23 673 696 673 696 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.3	1.2e+02	4.3	0.9	6	20	12	26	6	28	0.86
2	14	0.068	6.2	8.4	0.4	2	20	34	52	33	54	0.93
3	14	0.78	71	5.1	0.5	1	12	206	217	206	226	0.83
4	14	0.45	41	5.8	0.1	1	19	359	377	359	377	0.98
5	14	0.00024	0.022	16.1	0.4	1	23	384	406	384	406	0.98
6	14	2.9e-05	0.0026	19.0	0.6	1	23	421	443	421	443	0.99
7	14	1.3	1.2e+02	4.3	1.3	1	23	468	489	468	489	0.87
8	14	0.0003	0.027	15.8	0.3	3	23	497	517	495	517	0.96
9	14	0.0014	0.12	13.8	2.3	1	23	533	555	533	555	0.98
10	14	1.6e-06	0.00015	23.0	4.5	1	23	561	583	561	583	0.98
11	14	0.00059	0.053	14.9	5.2	1	23	589	611	589	611	0.97
12	14	1e-05	0.00091	20.5	0.4	1	23	617	639	617	639	0.98
13	14	0.00048	0.044	15.2	1.1	1	23	643	665	643	665	0.98
14	14	0.00022	0.02	16.3	0.1	1	23	673	696	673	696	0.96

Sequence Information

Coding Sequence: ATGGGAGGCCAGCCGTTGAATTGTCCACTTTGCTGCACTACGACTTTTAATTCTAAACAATCTCTACTTGAGCATTTGACTAATGCTTTACAGAATGTATATTGTCCTGTTTGTAACTACAAATGCAACTCGTTACCACACCTTGTGGAGCATTTGGCTCAGGATAATTGTCAGTCAGCTAACAACGTACATACTATTATATTTGAGCGTCCTTTAGATGAGGACGGCATTGAAAACTCATCAGATATTGGAAATTCTGGAATTAAAGTATATCAGAGTGaaataaatcctAATGGGAGCCACTTCACAACAGATCAAACTTACGAAGCTCATGTGGACCCAAATGAggcaaataaaatgtatgtggaACTATTTAGCAAACAGTTGAAACCGTGCATACAAACACGAGAATTTAAATTGGTGAAAGAAAATGGAGAGAGCCGGTACATGATTGTCACTCAAGATGATTCCGATGTAGGAGGCACTATTGtgacaaaacaaaatactgaTGGAACCATATCACTGACTACGGTTAAAGAAATGAATCTGAAAGCAGAGAACTTAATCACACCAGACAGTGTACAAGAAAATCAGGAAGATAATCAGGAGGAGATCTACAGCTGCAACACTTGCAAAGTGTCCTTCTCATCAGTAATAGAGCACATTCAGAACTACCATAATGATCAGGATGTGGTTGTTGAGgAGCCCATGGAAGATGGTCAGACTGAGTCAATGCCTGAATACGATCCAATGGTGAATGAAGACTCATTGGTGACGACAGACAAGCAGACTCCTCGGCGCGTCATCACCGATACGGGCGATATTGTGGAGGAACCACTCATGTACAAATCGGATGAAATCATATCGTCGAATCCATTGGagacAACACAAAACccgaataaaacagaaaaaaaagaattgcgCGTCTTCACCAAACGTTTTCTGCAAGTGGATAAGCTTTGCGACAGTGTCATCAAAGATGCCATCCAGACTGATGCAAAAGACAAAAGCGGCCCGTACCACAAGGTGATCGTCAAAGAAGTACCAACAGACAGCGGGTTCGCGATCAAGATGTACCAGTGCTTAGCCTGTGATATATCCGTCACCAACTTGGACGAGTTTAAAACACATCCGTGTAAAGTATtaaaatatccTTGCCTCTACTGTCCTGTGGCATATGAAAACTCGAAATCTCTGTGTGCACACATGAAAGCACACAAAGTGAAAACAGaagaaTCCATCGTCACTGGGCCAGTATCGTACGAATGTGGTGTATGCAGCACAGTCTTCCCTACCAACAAGTCTTTGAAATTGCACAAACGGATGCATGATCCTATCAAATCACGGCCCATAGAGCCTCCGATAGAAAACACGGACGGTTCAGAAGTGAGTGAAGGCAGATACAGATGTAATTTCTGCAACAAAATGATCCCCAATGACTACAAGACTATCCACCAGAATTCACACAAAACTTCGGAGAAAATGAACTGCGGGATTTGTAACAAGAAGTTCACATCTATCGAGTATTTGGAGATGCATACGAATGTACATAATGTGGATAAGGCGCCAATAAACAATCAAGATAAGAATTTACCGTACAATTGTTTGTATTGCAACAGAAGATTTGCGAGGCCGCACGAGAAAGTGAAACATGAAAGAATACACACAGGTGAGAAGCCACACTCGTGCGAGATCTGCGGCAAGTCGTTCCGCGTGTCGTACTGCTTAACCCTGCACATGCGCACGCACACCGGCGCGCGGCCCTACGCCTGCCCGCACTGCGGGAAGAGGTTCAAAGCCCACAGCGTGTACAACCACCACCTGCTGACGCACTCGGAGGTGCGCGCCTACAAGTGCCCCTTCTGCCCCAAAGCGTTCAAGACTTCCGTGCAACTCGCCGGACACAAGAACTCGCATACCAAGCCGTTCTCTTGCCAACATTGTAATAGGCCATTCGCGTCCTTATACGCGGTGCGCGTGCATACAGAAACGCACGCTCGCCAGAACAACCTGAAGTTCTCTTGCGAGCTGTGCGGCGCCAGCTACGCGAGAGCCTTCGCCCTTAAGGACCATATCAAACAAGCACACAGTGAACAGGAACAGGCGCAGTCGCCGTCACGAACAATTACTGACGATGATGACTGGTTGATCAAAAACAACCCGGATACGGATAGCAATCCGGCTCTCAATAAAGATTTGACGCATGAGATTGATCTGGGAATAACTGGCAACGAACTGATAGTTCCTTGA
Protein Sequence: MGGQPLNCPLCCTTTFNSKQSLLEHLTNALQNVYCPVCNYKCNSLPHLVEHLAQDNCQSANNVHTIIFERPLDEDGIENSSDIGNSGIKVYQSEINPNGSHFTTDQTYEAHVDPNEANKMYVELFSKQLKPCIQTREFKLVKENGESRYMIVTQDDSDVGGTIVTKQNTDGTISLTTVKEMNLKAENLITPDSVQENQEDNQEEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPMEDGQTESMPEYDPMVNEDSLVTTDKQTPRRVITDTGDIVEEPLMYKSDEIISSNPLETTQNPNKTEKKELRVFTKRFLQVDKLCDSVIKDAIQTDAKDKSGPYHKVIVKEVPTDSGFAIKMYQCLACDISVTNLDEFKTHPCKVLKYPCLYCPVAYENSKSLCAHMKAHKVKTEESIVTGPVSYECGVCSTVFPTNKSLKLHKRMHDPIKSRPIEPPIENTDGSEVSEGRYRCNFCNKMIPNDYKTIHQNSHKTSEKMNCGICNKKFTSIEYLEMHTNVHNVDKAPINNQDKNLPYNCLYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHIKQAHSEQEQAQSPSRTITDDDDWLIKNNPDTDSNPALNKDLTHEIDLGITGNELIVP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00445469;
90% Identity: iTF_01064919;
80% Identity: -