Nfim027867.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Noctua fimbriata
Gene Symbol
-
Assembly
GCA_905163415.1
Location
LR990947.1:11073164-11100140[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 9.6 8.7e+02 1.7 1.6 6 15 58 67 56 70 0.75
2 12 3.8 3.4e+02 2.9 0.2 1 23 499 521 499 521 0.92
3 12 0.00058 0.052 14.9 0.5 1 23 529 551 529 551 0.97
4 12 0.00085 0.077 14.4 1.2 1 23 557 579 557 579 0.98
5 12 1.9e-05 0.0018 19.6 2.6 1 23 586 608 586 608 0.99
6 12 2.6e-06 0.00023 22.3 0.4 1 23 614 636 614 636 0.93
7 12 8.5e-08 7.7e-06 27.0 0.1 1 23 642 664 642 664 0.98
8 12 5.9e-06 0.00053 21.2 1.9 1 23 670 693 670 693 0.96
9 12 0.00012 0.01 17.1 2.6 1 23 699 722 699 722 0.96
10 12 8.9e-05 0.008 17.5 2.3 2 23 729 750 728 750 0.97
11 12 1.3e-05 0.0012 20.1 1.5 1 23 756 778 756 778 0.97
12 12 0.033 3 9.4 0.1 1 23 784 808 784 808 0.93

Sequence Information

Coding Sequence
ATGAACCAGTCTTGTTTCATCTGTAACAACAGAGCTGGCCTCTCACTCAGAAACGCTTCAAGCCTGTTTGGAGAGCAAaaTACATTACAATCTGGCAAGAAAGTATCAGAGGTGGTGAGTGAAATTGTAGGTAAACCGGTGGTAGAAAATAAAGTACATACAAGTATATTATGTAAGAAATGCTTTAAAACATGCTCTGAGTATGATAGCATTCAAGTTAGatcaaaaacaataaaaacggaaTTACTAGAACAATTCAAACAATCATTACCTAGTCATAATTTAGACTATGATAACTATGAGAAGAATGTTGTTTCACTGCCAAAACCCAAACCAATATTGGGGAAGAAGCTGGTGTTGCCAGCATCAAAATTACAACCAATACCACCGGATTTATTGCTCAAAGTGGGGAAGTTAGCATCATTTTCCAAATCAAATGTCATTTTCCCACAAATCAAGCCGACCACAGCCTCAACATTAAACCTAAAAGTAACCGTCGGATCATCAGTCCtaacacaaacaataaaaacttcaaccagtaaaccaatAGAAAAACCCATATTAGACTCAAATTCGATCCTCACTTCATTGACAAATGCTTTGAAAGATGACCTAGATAGTTTGGTAACGACACAAAGTAATATGAACTCTATGAGTCCGAAGAATTCAATTTTGAGTTTCAATGTTAACTCATTGCCTAAAGATTTTCTTTCTGGGGCTATTTTGAGGAAATTGGATGAAAATAATGATGAGTATGAAAAGGGGGATGAGCCGAATGAAGATCATCCTATGGAGATTGATGAAGATTGTTTGTCTGTGGTGCCTGTGTCGACGGCCGATGGGAACATGGTGCTACAAGTTGAAGGACTACAGTCAAAATCCGACCCTACACCAGAAGTAAGCGAGTACCTAAACCTGCCTTCACTGGATGGTACTGATGAAGTCACTGATGCACAGAAGTATATCCTCGGCAAACTGGAAATACTTAATGAGGGTgacgaagatgatgatgatgacgatgatgatgatgaaggacaCACAATAGTCGTGGACAGTGAGAACGGCTCCATACTCCGCATGGTAACTGGACAGAAGTTTATCTACGAGGGTGGAGAGATATCACTGGTGAtgcctgatgatgatgatcagcaAGACGGTGATGGTGATCAACAGGATAACGGTGATAGCCAAGATTCCAATGATGAATCTCAGATCGAGTTACAAGTTTCAGGCGACGAAGAAACTGCGAACGCTATCATTGCAGCCGCTCAAGAACAagGAGGTGCTTTCATAAAAGTAGAATCAGGCGAGATGTACCGCGTGAAGTCCGTGTCCAGCGCGACCGCGGACAGAGCGGACGCGCCGCTACAGATCGTCGCGCAGGACGGGGACATGTTCAAGTGTCTGCTGTGCGAGAAGAATGATGAAAACACACCACTGGAAGATGCAGATACAATGATGCGTCACTTGAAATCGCAGCACGACGCGAGGATATACTTGTGTCGCTTCTGTGGAGCCGTCATGAGGAAACGCACGGAATATGTCACGCATATAGCCGGGCACGCAAGCGCGCCGGCCGGGTCGCACCGCTGCGCGCAGTGCGGCAAGGGCTACAGCTCGCGCACGCTGCTGCTGGAGCACGCCAACGTGCACTCGGGCCTCAGGCCCTACGTGTGCGCCAGCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCATCAGGCTCATCTCAAGACTCACGCCgTTCGCCCGCGGCCCTTCAAATGCACACAATGCGGCAAGTCGTTCCTCACACAACAAAATCTAAATCAGCATGAGAAAACACATTCGGGGGTCAAGGATTTCGTCTGTAATATATGCAacaAAGCCTTTAGCACACAACACAATTTAGAAGTTCATGGCGTGGTTCACTCCGGGAACAAGGCGTTTGTGTGCAGCGTGTGCGGGAAGGCGTTCGCGCGCAGAGCCGAGCTGAGGGACCACATGCGGATACACACCGGAGAGCGTCCATTCTCGTGCGACATCTGCGGCGCTCGCTTCACGCAGCGGTCCAACTTACACTCACATCGACGCGCGACGCACTTCGACGATAAGCGATATCACTGCGAGCTGTGTCCCAAGAGGTTTAAGAGGAGAAGATTACTAGAATATCACATAAAGGCATCGCACACTGGCGAGCGCCCCCTGAAGTGCGGCATCTGTCATCTGTCGTTCGTGTACCCCGAGCATTACAAGAAGCACGTGCGCATACACAGCGGGGAGAGGCCTTACACTTGTGAGATCTGCGGCAAATCGTTCAACTCGCGCGACAATCGCAACACGCACCGCTTCGTGCACAGCGACAAGAAACCTTACGAGTGCGTCGCGTGCGGCGCTGGCTACATGCGCAAGCAGCTGCTCTACGCGCACATGAACACCAGCGGGCATTTAAACGGATCTATAGTCGTCAATCAACCTAGAGTTATCAAAGTTACTGaaGGCACGAATCAACCAACAGAAATTACCAACGTAGAAGCGAAAAATACTAAATTTGACGCGGTAATAAAAGCCGAAACGGAAGTGAAACTGGAAGACGCCAAGTTCTACATAACAGAAGATAAGAAGTTAATATTACAAGAAAGTGATAACATAGGAGAGAGGGCCGAGGGCACTATCCTAGAAGCGGTGGATGCCGATCAACTTGGAGAACAGACTGAGaTCGTAGCAAACGATGAAAACGGCGGTATGGTGCGTCTCATACAAATCAAGTTGCCGGACGGAAACAACGGATGGGTCGCTATCAACCGCTGA
Protein Sequence
MNQSCFICNNRAGLSLRNASSLFGEQNTLQSGKKVSEVVSEIVGKPVVENKVHTSILCKKCFKTCSEYDSIQVRSKTIKTELLEQFKQSLPSHNLDYDNYEKNVVSLPKPKPILGKKLVLPASKLQPIPPDLLLKVGKLASFSKSNVIFPQIKPTTASTLNLKVTVGSSVLTQTIKTSTSKPIEKPILDSNSILTSLTNALKDDLDSLVTTQSNMNSMSPKNSILSFNVNSLPKDFLSGAILRKLDENNDEYEKGDEPNEDHPMEIDEDCLSVVPVSTADGNMVLQVEGLQSKSDPTPEVSEYLNLPSLDGTDEVTDAQKYILGKLEILNEGDEDDDDDDDDDEGHTIVVDSENGSILRMVTGQKFIYEGGEISLVMPDDDDQQDGDGDQQDNGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVSSATADRADAPLQIVAQDGDMFKCLLCEKNDENTPLEDADTMMRHLKSQHDARIYLCRFCGAVMRKRTEYVTHIAGHASAPAGSHRCAQCGKGYSSRTLLLEHANVHSGLRPYVCASCGKAFASKYTHQAHLKTHAVRPRPFKCTQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCSVCGKAFARRAELRDHMRIHTGERPFSCDICGARFTQRSNLHSHRRATHFDDKRYHCELCPKRFKRRRLLEYHIKASHTGERPLKCGICHLSFVYPEHYKKHVRIHSGERPYTCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSGHLNGSIVVNQPRVIKVTEGTNQPTEITNVEAKNTKFDAVIKAETEVKLEDAKFYITEDKKLILQESDNIGERAEGTILEAVDADQLGEQTEIVANDENGGMVRLIQIKLPDGNNGWVAINR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00726717;
90% Identity
iTF_00301435;
80% Identity
-