Basic Information

Insect: Noctua fimbriata
Gene Symbol: -
Assembly: GCA_905163415.1
Location: LR990949.1:6618165-6620063[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.072 6.5 8.3 0.8 1 23 68 90 68 90 0.95

2 16 0.14 13 7.4 0.0 2 23 118 140 117 140 0.89

3 16 6.5e-05 0.0059 17.9 0.4 2 23 161 183 160 183 0.96

4 16 0.0006 0.055 14.9 4.4 1 23 188 210 188 211 0.96

5 16 3.3e-05 0.003 18.8 0.4 1 23 215 238 215 238 0.96

6 16 0.12 10 7.7 0.3 2 23 241 263 240 263 0.95

7 16 0.1 9.3 7.9 1.3 2 20 268 286 267 291 0.91

8 16 0.0049 0.44 12.0 2.9 2 23 336 358 335 358 0.93

9 16 9.8 8.9e+02 1.6 0.4 2 23 387 409 386 409 0.92

10 16 0.00029 0.026 15.9 0.0 1 23 431 454 431 454 0.92

11 16 5.6e-05 0.0051 18.1 0.9 1 23 459 482 459 482 0.94

12 16 3.5e-05 0.0032 18.8 0.4 1 23 488 511 488 511 0.96

13 16 0.00012 0.011 17.1 0.7 2 23 517 539 516 539 0.97

14 16 0.0011 0.1 14.0 4.4 1 23 543 566 543 566 0.97

15 16 0.014 1.3 10.6 0.8 2 23 573 594 572 594 0.96

16 16 0.027 2.4 9.7 1.6 1 23 600 622 600 622 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.072	6.5	8.3	0.8	1	23	68	90	68	90	0.95
2	16	0.14	13	7.4	0.0	2	23	118	140	117	140	0.89
3	16	6.5e-05	0.0059	17.9	0.4	2	23	161	183	160	183	0.96
4	16	0.0006	0.055	14.9	4.4	1	23	188	210	188	211	0.96
5	16	3.3e-05	0.003	18.8	0.4	1	23	215	238	215	238	0.96
6	16	0.12	10	7.7	0.3	2	23	241	263	240	263	0.95
7	16	0.1	9.3	7.9	1.3	2	20	268	286	267	291	0.91
8	16	0.0049	0.44	12.0	2.9	2	23	336	358	335	358	0.93
9	16	9.8	8.9e+02	1.6	0.4	2	23	387	409	386	409	0.92
10	16	0.00029	0.026	15.9	0.0	1	23	431	454	431	454	0.92
11	16	5.6e-05	0.0051	18.1	0.9	1	23	459	482	459	482	0.94
12	16	3.5e-05	0.0032	18.8	0.4	1	23	488	511	488	511	0.96
13	16	0.00012	0.011	17.1	0.7	2	23	517	539	516	539	0.97
14	16	0.0011	0.1	14.0	4.4	1	23	543	566	543	566	0.97
15	16	0.014	1.3	10.6	0.8	2	23	573	594	572	594	0.96
16	16	0.027	2.4	9.7	1.6	1	23	600	622	600	622	0.94

Sequence Information

Coding Sequence: ATGGGCCTATACAGATTAACACATCTGTACTTCGCCATCCCTCCATGCACTGCCTTTGCCAACTCAAAAGTACAAAACAATCATTTCTTTTCAGATTTGGAAACAGAGGTGACAAAGCACAGTGCTAGTTATCTAAGGAGGCGAAATCTGCAAATATTGCTCAACCATACAACGTTGATACCTTTTAAATGGCGTGGCAAATACCTCTGCTTTTATTGTGGAGATGATACAAAGACGCCCGATCGTCTCCGGAAACACACGAAAGCTCATGGACCTTGCAGTGATAGGGACAGAGCTATAAGACTAGTTAAATCAGCTGATGTAGAAATCAAAATAGATGTTTCCGATGTTAGCTGCGAGATTTGTTCAGAATCTTTTCCGTTTTTAGACGAAATCATCGATCATTTGATTTTCAAACACCAATTGCCTTATGACAAAGACATAGACATATTCTTATCAGCCTACAGGTTATTAGATCTACAATGTCTTCTCTGCGATAAAAGCTTTAATTACTTGCGTAAATTAATAAGCCATATGAATGTCGCTCATCCGAATAACAGCTATGAGTGCGCTAAATGTACAaagaagtttaataaaaaaagggaTTTAGATTCGCATATAAGATTCCACCATAAGACATGCCATCCTTGTACCAAATGCGATGAGAAGTTTCCTACCAATGCAGCGTTACAAGTTCATAGGTCTACCGCTCATTCTTCGACCTGCAACATATGTTTTCAAGTCTTTGCGTCTGATGGAAAGAGGCTAGCTCATCTAAAATCGGATCATGTCACTGAGAACCAATGTGGATTCTGCAATAAAATTCTAACAACTAAACAAGCTTTTATAAGACATGCCGCAAATTGCGAACATAAACCAAATGAAGAATCCATCATAATTGATGAAGAAGACAAAAAGATTTCTgttaaagaaataagaaaaggtTTAGCAGCCATCTTTAATATAACTACCGCACTTCCTTTTAAATTCTTCATGAACAGGCTGAGATGTTTCTACTGCACGAAAGACTTTAATTCTTGCGAGGATTTAAAGGAGCATACGTTGAACGAACATCCTCATTGCGATATATCTTTCAAATCTATGAGGCTAAGGAACAGATATGACGGTGTTCAAATCAAAGTTGATACTTCGGCTTTGTCTTGTAGACTGTGTCATATCTCCTTGCAGGATTTGAACGATGTGGTCGACCATTTGAGCAAAGAGCATAAGGTGAAATGCGACTTTTCTGTGGAGAGTAATCTACAGCCTTACAAACTAATTAAAGACAACTACCCATGCCCTATTTGTGGTGAAGTTTATAGATACTTTGGGCTCCTACTTAAGCATGTTAGTGCGTCTCACAGTGgtaataaacatatttgtatgtacTGCGGAAAAGCGTTCAGAACGGACCCGAATTTAAGAGCTCATGTATCAAGGCGACATAAAATCGGTGATAATCACAAGTGCAGCAATTGCGATCTGGTTTTTGCGACTAACGGTGCGTTAAGGAGTCATCAAGGGACGGTTCACGGTACAAAATTAGTTCAGTGCTTCGAATGTACTGAAAAATTCACTTCGCAGTATGCCATGCAAAGGCATTTGATCACGTCTCATGGTACAGGGCATAAATGTTCTTATTGTGATAAACTATTCACTAAAAACTCTTTCATGGTCAACCATGTAAGAAGGTCCCACTTAAAAGAAAAGAATGTAGAATGTTCTGTATGCTTCGAGAAGTTTTTCGACAGCCAGAGGCTGAAAATGCATATGGTTAAGCATGTAGGGGAAAGGAACTTTCATTGTGATATTTGTGGTAAAAAGTTCTTATGGAAAAGGAATCTTAGAGGCCACATGGGTTCCCATATTCGGAACGCGAACGCTCGAAATGTTACCTAA
Protein Sequence: MGLYRLTHLYFAIPPCTAFANSKVQNNHFFSDLETEVTKHSASYLRRRNLQILLNHTTLIPFKWRGKYLCFYCGDDTKTPDRLRKHTKAHGPCSDRDRAIRLVKSADVEIKIDVSDVSCEICSESFPFLDEIIDHLIFKHQLPYDKDIDIFLSAYRLLDLQCLLCDKSFNYLRKLISHMNVAHPNNSYECAKCTKKFNKKRDLDSHIRFHHKTCHPCTKCDEKFPTNAALQVHRSTAHSSTCNICFQVFASDGKRLAHLKSDHVTENQCGFCNKILTTKQAFIRHAANCEHKPNEESIIIDEEDKKISVKEIRKGLAAIFNITTALPFKFFMNRLRCFYCTKDFNSCEDLKEHTLNEHPHCDISFKSMRLRNRYDGVQIKVDTSALSCRLCHISLQDLNDVVDHLSKEHKVKCDFSVESNLQPYKLIKDNYPCPICGEVYRYFGLLLKHVSASHSGNKHICMYCGKAFRTDPNLRAHVSRRHKIGDNHKCSNCDLVFATNGALRSHQGTVHGTKLVQCFECTEKFTSQYAMQRHLITSHGTGHKCSYCDKLFTKNSFMVNHVRRSHLKEKNVECSVCFEKFFDSQRLKMHMVKHVGERNFHCDICGKKFLWKRNLRGHMGSHIRNANARNVT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00712188;
90% Identity: iTF_00712188;
80% Identity: -