Nfim025582.1
Basic Information
- Insect
- Noctua fimbriata
- Gene Symbol
- -
- Assembly
- GCA_905163415.1
- Location
- LR990944.1:2937710-2938495[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-08 4e-05 24.2 0.0 4 41 11 47 8 50 0.82
Sequence Information
- Coding Sequence
- ATGGCgcctaaaaaaaattacacgccTCTTCAAATGGCCCAGGCGGTAGAAGCAGTCAGAAAAGGTGAGAAAACTGCAACTGCTGCAAAAAAGTTTGGTGTACCCAGAATTACATTACATGATAAGATTTCCGGTAAGACTCCAGTTGAATGTTCCATGGGCCCTAAAACATATTTGTCAACGGAAGAGGAggctattttagaaaaatgggTACTTGAAATGGCTGAAAAACACATTCCCGTTACTAGAGATGAGCTCCTCGATAGCGTACAACGTATCATAATTGATCAGGATAAAACAACCCCATTTACTGACAATAGACCGGGCAAGAAATGGTACAACCTTTTTCTAAACAGACATCCTATATTGTCTGAGAGAACGGCACAAAATTTAACGACAGCTCGAGATGCTGTTACAGAAGAGCATATAAGGCGGTGGTTTGAAGAAGTTGAATCTTATCTACGCGAAAATGATCTCAAAGATGTATTAGAACAGCCGGCAAGAATATTCAACACAGACGAAAGTGCCTTTTTTTTGTCGCCTAAGGCTGGTAAAGTTCTTGCAAAAAAAGGTGACAAACATATCTACCAATCCTCCGGAGACGAAAAAGATAATTTGACAGTACTAATTACTGGAAATGCCGCTGGACAGTTGGCACCACCCATGGTAGTATTTGCATATGAGAGAATCCCGGCCATAATTTCATCCCAGTTTTCTGAAGATTGCCCAATCTTGGACGTTCACAGAGTGGCTGGATGTGTGGCAGCACGTTTTATGAATACATAG
- Protein Sequence
- MAPKKNYTPLQMAQAVEAVRKGEKTATAAKKFGVPRITLHDKISGKTPVECSMGPKTYLSTEEEAILEKWVLEMAEKHIPVTRDELLDSVQRIIIDQDKTTPFTDNRPGKKWYNLFLNRHPILSERTAQNLTTARDAVTEEHIRRWFEEVESYLRENDLKDVLEQPARIFNTDESAFFLSPKAGKVLAKKGDKHIYQSSGDEKDNLTVLITGNAAGQLAPPMVVFAYERIPAIISSQFSEDCPILDVHRVAGCVAARFMNT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00358485;
- 90% Identity
- iTF_01076435; iTF_00636348;
- 80% Identity
- -