Nfim030456.1
Basic Information
- Insect
- Noctua fimbriata
- Gene Symbol
- -
- Assembly
- GCA_905163415.1
- Location
- LR990950.1:9458828-9466260[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-11 1.4e-07 32.1 0.0 5 39 1 36 1 40 0.88 2 2 7 1.1e+04 -2.9 0.0 31 40 129 139 128 141 0.79
Sequence Information
- Coding Sequence
- ATGGAATTAGCGGTTAACTCGGTAGAAAATAAGCAGCTGTCAATCAATGAAGCTGAAAAGAAGTTCGGGATCCCACGATGGACTTTATACCACAGAGTTAGGAAAAGAGCTTTGGACGCATTCCCTGAGGAAGTGGAAGATGACACAGATGGAGAAATTACTGATCAGCTTACCAAGAAATTTTTAAAACTCTCCTTGGTTGACTCGGAAGTGCCGTGCTTGACCGACGAGGACACGTGGAAAATGGGTTGCCCTGATAAGGATCGGCTCGAGAACCCGTCTTCGAAACAGTGGGCTGAGCCGCTCAGCAGAAGAAGCCAGAGAACCCAATCAGAAGCCGATTTCAGATATGAATGCAATGCGTGCAAAGCTATGTTCCAGTTTAACAGCCTATTGAAGTATCACATCAGAAGACATCACTTTAACCGTGTTGGTCGTGTACCTCATGCAGAAACCCAAGCTGTTGACAAGgtatGGTACGAGAGAGTAGCAAATACAGATGCCGTAGTAAAAATGAGAAAAGTCAGTGAAAATGTGCTCATAATACAAAGGATAAACGATCTAACGGACCTACCTACAGAAGTTATTTCTGAGGAGCATGAAGAAGTCTTAGACCTACGAAACATGTACCCTATAAATTCGAAAAAAGAGAAGAATTTTCTGGAGTGTCACGTATGTCACAAGAGCTTTGGTAGAAGAGTCTTGGGCAAGCATTTTATAAAGGCTCACGCGCaccttgtcaagaaaaaatgtgaTGCTTGTCAGATGAAGTTCAAACGGGCTTTTAACTGCGCCAAACATGTCTGTCCTGAGAGCATACAGTAA
- Protein Sequence
- MELAVNSVENKQLSINEAEKKFGIPRWTLYHRVRKRALDAFPEEVEDDTDGEITDQLTKKFLKLSLVDSEVPCLTDEDTWKMGCPDKDRLENPSSKQWAEPLSRRSQRTQSEADFRYECNACKAMFQFNSLLKYHIRRHHFNRVGRVPHAETQAVDKVWYERVANTDAVVKMRKVSENVLIIQRINDLTDLPTEVISEEHEEVLDLRNMYPINSKKEKNFLECHVCHKSFGRRVLGKHFIKAHAHLVKKKCDACQMKFKRAFNCAKHVCPESIQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -