Ncom020673.1
Basic Information
- Insect
- Noctua comes
- Gene Symbol
- -
- Assembly
- GCA_963082995.1
- Location
- OY720291.1:1102624-1110272[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.01 0.78 10.9 0.1 1 23 215 237 215 237 0.97 2 12 0.00047 0.036 15.2 3.6 1 23 243 266 243 266 0.94 3 12 3.9 2.9e+02 2.8 2.3 1 23 280 302 280 302 0.94 4 12 6.1e-05 0.0047 17.9 3.2 1 23 564 586 564 586 0.98 5 12 0.046 3.5 8.9 2.1 3 23 593 614 592 614 0.97 6 12 9.2e-05 0.007 17.4 1.0 2 23 623 644 622 644 0.96 7 12 7.7e-05 0.0059 17.6 1.1 2 23 648 669 647 669 0.97 8 12 0.063 4.8 8.5 1.4 2 23 683 705 682 705 0.96 9 12 7.8e-06 0.0006 20.7 2.0 1 23 711 733 711 733 0.98 10 12 0.0042 0.32 12.2 3.8 2 23 740 761 740 761 0.98 11 12 0.00058 0.045 14.8 2.4 1 23 767 790 767 790 0.96 12 12 0.0039 0.29 12.3 2.5 1 23 794 817 794 817 0.96
Sequence Information
- Coding Sequence
- ATGGATGAAGAAGAAAATTTTCCGGTGTTATGCCCCAAGAAAACGTATTCAAAACCGTTTAAGAAGATGACAAGAGCAGTATCAGAGTCTAATAATGTGGAAAATACCTTTAGACTAAAGAAAAAGGCCTACGATCCGGGTGTACCATTGACAACGAAAGTTGCTGTGGAGTATTTGTTAAACGGGAAGCTAAAGACGAGTGTTTGTCGTTACTGTCTTAAAGTAACAGTAGGATTGTCTGAACTTGACCAGATAATGCAGATAGCTGGCACAGGAGTCATGTATAAAGTGTCGATAAGGGAAATGATAGCCTGTTTCTACCCTTTCAAGGCTAGACAAGACGAAAACTTCCCAGAGAAGATATGTCAGAGATGTATAGACAGGGCTCTCAACGCATACCTGTTCACACAGCAGTGTGAGCAGGCTGAAAGGGCTTTACACAACTGTTTTGACGACATCAATGAAAAGTCCAATAAACTAGACCCCGTAGACAGACCAAAAAAGAGAGGAAGACAAaaactacatccaaactttaatAAGTTATATGTAGAAAATAGTAAAGTAATGGATTACGCTGAACCATTACGAAACATCATCAATTTACAAACAGAATCATTGAGCAACGAACCTGATTGGAACGAATTTGAATGTAAGAAGTGCTGGCAAGTACTCCCAGACCTTGAATCGTTGCTCAACCATGAGCAAATACATCCTAAATACATGTGGTATCATTGCCGATTATGTGGTAAATCTTTTGTAAAACTTAACCAGCTAAAGAAACATTTCAACCAAGTCCATGTACGAGGAAAAGAGGTTACCGAAGAGGCAGTCAAGACTTTCAAATGTCTGGAATGTGGCAATGTAACAGAAAACTATGTACATCATCTACAACATATAGAGAAACACAAATTTAAAAGTGTAATGAAACATTTAATTGAGAAGAAAACAGACCAACTATGCTTGGTTTGTCTTAAAAAGTGTACGGATTTGGTGGAGCTCGACAAAATGGTGTGCATACATGGAAATTGTCCAGAACTGGTTGGAGATAAAACACTGAAAATGGTGCTAGCTTCGACTTTACCTGATATGAACTACGTACACAACTTCATTGGGACAAAAATATGCGAAAAGTGCCTTAACCATGCAATAacttcatacatttttatacaCCAGTTCAATTTCACTAGGGAAAGATTAGATCTATGTGTCAGTCTCATGTTGGAGAACCTTAGTGAAATAAAACCAAATGCTAATGTTTTCGTCCAAGTTTCGCCGCCAAGTATTATGGCACCTCAAGACGATTTGGATGAGTCTTTACTCCTAGACGAAAATGACTTCATAGATGAGAGCAAACTGAAAATAGATGTCCTAGAGGATGAGTTCAGAGTAAAATCTGAGAGTGAATCTGAAGCAGAAGTTACTTTTGAAGCTTCATCAACAAAACGGTTTGAAGTAGAATTAAAATCAGCCTCTAAAGAAGAAACAATCGATTCTTCTTTTCCATCAAAACGGTTTCAAGCAGATGTAAAATTAACACCAGAAATCGAGAATTTAGCTAGAAGTGCGACTAAAACTTACATGAATAAAAAACTAGTAAACGGCTTACAAAGTTCGAAGTATCCCGTAGATGTGTGCAGCGAATTTTTAACGTtcaacaaaaggaaaaaaattgaaaaggtTTCGTTAAAGTTCACTTGTCCTTTATGTAGCAAACATTTCATATCAGAGTATTTCTTAAAAAGACATATTCTTAAACATGTGAACAAGAAAGTTCTATGCAATATTTGTCTTGGTGTATTCAAATCGAAGTTCCATTTGTACGAGCATACTAAAATGACACATTTACAAAACGAGAGCTTTTATATGACTTGTAAAGAATGTGGTAGGAATTTCACTGATACGGATAAATTACAATCTCACGAAGAGAAACACAGAATTAAGCCTTGTCAACTCTGCAATAAGGTCTATGTTACCCAAGCACATTACGAGAATCACATTCAACGGCACGCAATGAAATTGaagcttttaaaagaaaaacaagctCAAACATGCAGTTTCTGCGAGAAAGAGTGTTCAAACGACAATGAACTCTCTGTCCACGTAAATAAAGtacatttacaaataaaaccatACAGTTGTGACATGTGTGATAGACAATTTTATACTGAAAGTAATTTGAAGAATCATAAAAAGATACATAGTATGCCTTCGAAGGAAACTTgtgaattttgtaataaaactcTGTGTAGTAGGAAACAGTTAGTAATTCATGTTAGGAAACATATTGGCGCTAAACCCTTTTGCTGTCAGGTTTGCGGTCAAGCGTTCTATTCAGCTTATAAAGCTAGAAAACATATGAAAATCTACCATGGTGGCCGATTCTGCTGTAGGATTTGTAAATCTATCTTTGCAACCAAATATGAACTTAAGGATCACGTCAATAGAGATCATAACGTCATTTAG
- Protein Sequence
- MDEEENFPVLCPKKTYSKPFKKMTRAVSESNNVENTFRLKKKAYDPGVPLTTKVAVEYLLNGKLKTSVCRYCLKVTVGLSELDQIMQIAGTGVMYKVSIREMIACFYPFKARQDENFPEKICQRCIDRALNAYLFTQQCEQAERALHNCFDDINEKSNKLDPVDRPKKRGRQKLHPNFNKLYVENSKVMDYAEPLRNIINLQTESLSNEPDWNEFECKKCWQVLPDLESLLNHEQIHPKYMWYHCRLCGKSFVKLNQLKKHFNQVHVRGKEVTEEAVKTFKCLECGNVTENYVHHLQHIEKHKFKSVMKHLIEKKTDQLCLVCLKKCTDLVELDKMVCIHGNCPELVGDKTLKMVLASTLPDMNYVHNFIGTKICEKCLNHAITSYIFIHQFNFTRERLDLCVSLMLENLSEIKPNANVFVQVSPPSIMAPQDDLDESLLLDENDFIDESKLKIDVLEDEFRVKSESESEAEVTFEASSTKRFEVELKSASKEETIDSSFPSKRFQADVKLTPEIENLARSATKTYMNKKLVNGLQSSKYPVDVCSEFLTFNKRKKIEKVSLKFTCPLCSKHFISEYFLKRHILKHVNKKVLCNICLGVFKSKFHLYEHTKMTHLQNESFYMTCKECGRNFTDTDKLQSHEEKHRIKPCQLCNKVYVTQAHYENHIQRHAMKLKLLKEKQAQTCSFCEKECSNDNELSVHVNKVHLQIKPYSCDMCDRQFYTESNLKNHKKIHSMPSKETCEFCNKTLCSRKQLVIHVRKHIGAKPFCCQVCGQAFYSAYKARKHMKIYHGGRFCCRICKSIFATKYELKDHVNRDHNVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907334;
- 90% Identity
- iTF_01533379;
- 80% Identity
- -