Basic Information

Insect: Noctua comes
Gene Symbol: -
Assembly: GCA_963082995.1
Location: OY720296.1:5282009-5285257[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.007 0.54 11.5 0.9 1 23 10 33 10 33 0.95

2 15 0.0022 0.17 13.0 0.4 1 23 133 155 133 155 0.97

3 15 0.21 16 6.8 1.3 1 23 160 182 160 182 0.95

4 15 0.054 4.1 8.7 2.3 2 23 190 212 189 212 0.96

5 15 0.00012 0.009 17.0 1.8 1 23 219 242 219 242 0.96

6 15 3.9e-05 0.003 18.5 5.7 1 23 248 270 248 270 0.98

7 15 2.3e-06 0.00017 22.4 2.0 1 23 276 298 276 298 0.99

8 15 0.0028 0.21 12.7 0.7 1 23 377 400 377 400 0.95

9 15 0.014 1.1 10.5 0.1 1 23 500 522 500 522 0.93

10 15 0.54 41 5.5 2.9 1 23 527 550 527 550 0.94

11 15 0.19 15 6.9 1.6 1 23 557 580 557 580 0.92

12 15 0.00035 0.026 15.6 2.6 1 23 587 610 587 610 0.98

13 15 4.4e-05 0.0034 18.4 1.8 1 23 616 638 616 638 0.98

14 15 1.3e-05 0.001 20.0 2.5 1 23 644 666 644 666 0.99

15 15 5.3e-07 4e-05 24.4 0.4 1 23 672 695 672 695 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.007	0.54	11.5	0.9	1	23	10	33	10	33	0.95
2	15	0.0022	0.17	13.0	0.4	1	23	133	155	133	155	0.97
3	15	0.21	16	6.8	1.3	1	23	160	182	160	182	0.95
4	15	0.054	4.1	8.7	2.3	2	23	190	212	189	212	0.96
5	15	0.00012	0.009	17.0	1.8	1	23	219	242	219	242	0.96
6	15	3.9e-05	0.003	18.5	5.7	1	23	248	270	248	270	0.98
7	15	2.3e-06	0.00017	22.4	2.0	1	23	276	298	276	298	0.99
8	15	0.0028	0.21	12.7	0.7	1	23	377	400	377	400	0.95
9	15	0.014	1.1	10.5	0.1	1	23	500	522	500	522	0.93
10	15	0.54	41	5.5	2.9	1	23	527	550	527	550	0.94
11	15	0.19	15	6.9	1.6	1	23	557	580	557	580	0.92
12	15	0.00035	0.026	15.6	2.6	1	23	587	610	587	610	0.98
13	15	4.4e-05	0.0034	18.4	1.8	1	23	616	638	616	638	0.98
14	15	1.3e-05	0.001	20.0	2.5	1	23	644	666	644	666	0.99
15	15	5.3e-07	4e-05	24.4	0.4	1	23	672	695	672	695	0.97

Sequence Information

Coding Sequence: ATGATACTCAAACATGGAGATAAAGGATACTTGTGCTGTTATTGCACGGAAGCTTTCCAAGAGCCAATGAATTtgaaagtgcatactttaacgGAACATCAAAACGAAGGCAAATTCTATGGCAACATAAAAGCCAAAGGACCAGCTAGGTTCTTAGTCAAACTGGACATCACGAACCTAAAATGTATGCTTTGCAGCGCCAATATAGATTCTCTTGGAGATATATTCGTCCATCTCACTGAGAAACATGATAAGAGCTTCTATACTGATatacaaaatcaaatatttcCCTTCAAATTCAATACGAAACAAATGAAATGCTGTCAATGTACTAGTGACGTCGTCTTCGCCACGTTTAGTGCATTACATGAGCATATGCACCAACACTACAGATACTTCATTTGTGACGTGTGTGATGCTGGATTCGTCAATCATGATACTTTATCCAGCCACAAAGTCACCCACACGAAAGGAACCTTTGCCTGCCGACATTGTCCGGTCGTATTCGACAACGTGTACAAGAGAAGGAACCACGAGATTCGCCACAGTAAAGCTGGCAAATTAAACAAATGCCACTTCTGCAATgaattttttaaagattataatacCAAGGAAATTCATCTTGCTACGGTACATGGCGTTGCTCCAGCGAAACACAACTGCACTGCATGCGACAGGAGCTTTCCTTCTAATAGTTTCCTTAGCGCACATATCAGACGGTTCCACTTGATGGAGAAGACTCACAAATGTTCAGAGTGCGACAGAGCGTTCTTCAGAGAAAGCCATTTAAAGAAACATACGCTGAGTCATACAGGGGCTAAAAATTTCAAGTGCGAAGTCTGTTCAAAGCAGTTTACTACTAAATCTATTCTGACTCGGCATATGAGAATTCATAACAATGATAGGCGCTTTAAATGTACAATATataaacaagaaaaagtgGCTACATCTACGTACATCAAAATAGAGCCGACATTGGTACCTATCGAAGAGtacaatatacaaataaaacctGAGACGGCACCTCGACCACGCATAAAGCGACTACTACACAAGCATCTCCACAATCTGAAACTAATCCTAGAATCTACGAATGCGACGATGATACTCAAACATGGAGATAAAGGATACTTGTGCTGTTATTGCACGGAAGCTTTCGAAGAGCCAATGAATTtgaaagtgcatactttaacgGAACATCAAAATGAAGTAAAGTTCTATGGCAACATTATAGCTAATGGACCAGCTAGGTTCTTAGTCAAACTGGACATCACGAATCTAAAATGCATGCTTTGCAGCGCCAACATAGATTCTCTCGATGATATATTCGTCCATCTCACAGAGAAACACACTAAAAACTTCCATACTGATATACAAAATCAAATATTCCCTTTCAAGTTTAACACAAAACAACTGAAATGCTGCCTATGCACGAGCGACGTCGTTTTCGCCACGTTTAGAGCATTACACGAGCATATGCACAAACACTACCGTTACTTCCTTTGTAAGCAATGTGATGCTGGTTTTATCAATCCTATATCGCTATCCAATCATAGCGTCACTCACACGATAGGGACCTTCGTCTGCCGACATTGTCCTGTCACATTTGACAACGTGTTCAAGAGAAGGAACCACGAAATGCGCAAACATACTCAAAATGGCAAATCGCATATATGCCATATATGCAACGAGGGTTTTAAGGAGTATATTACGAAGGAATTGCATCTGTCTACAGCTCATGGTGTTAGTCCACGGATATATAGCTGCACCGCGTGTGACAGAAGTTTTACTACCCACAGTATTCTTAGAGTACATATAAGGCGCTTTCATCTGATGGAGAAAAATCACAAATGTTCCGAGTGCAGTAGAGCTTTCTTCAGAGATGGCGACCTTAAGAAACACATGCTAGTTCATACAGGAGCTAAAGATTTTAAATGCGAAGTCTGTGCGAAGCATTATGCTAAGAAATCTACTTTGAACCAACACATGAGAATTCATAACAATGATAAGCGTTTTAAATGTACGATATGCGACAAGGCGTTTGTGCAGAAACCTAGCTTGTCCTGGCATATGAGGGCGAAGCACTCTGATTGA
Protein Sequence: MILKHGDKGYLCCYCTEAFQEPMNLKVHTLTEHQNEGKFYGNIKAKGPARFLVKLDITNLKCMLCSANIDSLGDIFVHLTEKHDKSFYTDIQNQIFPFKFNTKQMKCCQCTSDVVFATFSALHEHMHQHYRYFICDVCDAGFVNHDTLSSHKVTHTKGTFACRHCPVVFDNVYKRRNHEIRHSKAGKLNKCHFCNEFFKDYNTKEIHLATVHGVAPAKHNCTACDRSFPSNSFLSAHIRRFHLMEKTHKCSECDRAFFRESHLKKHTLSHTGAKNFKCEVCSKQFTTKSILTRHMRIHNNDRRFKCTIYKQEKVATSTYIKIEPTLVPIEEYNIQIKPETAPRPRIKRLLHKHLHNLKLILESTNATMILKHGDKGYLCCYCTEAFEEPMNLKVHTLTEHQNEVKFYGNIIANGPARFLVKLDITNLKCMLCSANIDSLDDIFVHLTEKHTKNFHTDIQNQIFPFKFNTKQLKCCLCTSDVVFATFRALHEHMHKHYRYFLCKQCDAGFINPISLSNHSVTHTIGTFVCRHCPVTFDNVFKRRNHEMRKHTQNGKSHICHICNEGFKEYITKELHLSTAHGVSPRIYSCTACDRSFTTHSILRVHIRRFHLMEKNHKCSECSRAFFRDGDLKKHMLVHTGAKDFKCEVCAKHYAKKSTLNQHMRIHNNDKRFKCTICDKAFVQKPSLSWHMRAKHSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00301460;
90% Identity: iTF_00301460;
80% Identity: -