Ncom015261.1
Basic Information
- Insect
- Noctua comes
- Gene Symbol
- tc3a
- Assembly
- GCA_963082995.1
- Location
- OY720283.1:13948388-13952303[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-05 0.042 14.2 0.1 7 39 10 41 9 47 0.83 2 2 0.0002 0.35 11.2 0.0 18 40 342 364 332 367 0.90
Sequence Information
- Coding Sequence
- atgcCACTAATACCAGCACAGGATGCACAAGCCGTAGCATTAATTGACCAAGGGCTGTCGCAGCGTGAAGTTGCTATTGCGCTTAACATACCACGGTCATCGTTGCAGTATGCCCTTAAACGATACCAGGAGACAGGCCAGTACACCCGCAGGCCAAGCAGTGGAGGCGTAAGGTGCACATCGACCCGAGACGACCGCTTTATTGTCCTGGTGATTTTGAGAAACCGCTACCTGACCGCTGTTGAGATACCCCAGCAGCTTCAAATCGCGAGAGGCGTTAATGGTAGCGAGCGTACGGTGAGAAGACGAATGGAGGAAGTAAATTTAAAAGCTCGTAGACCAGCACGAGGTCTAGAACTTCTCAGACAGCACCGAGTAGCTCGACTACAATTCGCACGAGAACACGTCAACTGGACCCACGAGCAATGGGCTGGAGTACTGTTCAGAGATGAGTGTCGAATAGCTTTACGTGCTCCAGATGGTCGGGAACGAGTGTGGAGAAGAAGAGGGGAGCGGTTTTTACCCATTACCACCACGCAAACAGTGAATTTCCATGGAGGCTCAATTATGGCATGGGGAGGTGTAAGTTCCGACGCACGTACAGAGTTGGTTATCGTCGAAAATCGGCTAACAGCTGTTCGAGATATCGAGGAAGTTCTTCAGAAAAACGTAATGCCTTATTCGGGGTTCATTGGACACGACCAATTCCTCCTAATGCACGATAATGCACGCCCACACGTCGCACATTGCGTAGAAGAATATCTGGAAGAGGTTAGCATACAAAATTTGCAGTGGCCAGCTCGTAGCCCAGACTTAAACCCCATTGAGCATAACAGGGATATGctaaaaagaaagataaagtCCAGCTCAAACCCGCCACAAACTCTAAACCAGCTCCGAACTGCAGCCCTGGCCGCTTGGGGCAATATACTGCAAGTTGATGTCAGAAACATCATCCAAATTATGCCAGAACGAGTGCAGGCGGAAGATATCCTGGAGTACTTCCAGCGAGAGCCACGGGCAAGCACGCGGGAGGCTGGTCGACGGTTTGGAGTGCACCAGACCACAGTGTGGCGACTACTGAGACGTGAACAGCAGCACCCGTTTCATTACCGCAAGGTGCAAGACCTACACCCAGGTGATAACGCCGCACGGGTTACGTTTTGTCGCTGGTTGCTGGAACACCAAGACGCCAACATCCTGTGGACGGACGAGTGTTTATTTACTCGAGTTGGCGTCTACAATGTTCATAACGAACACTGGTGGGCTCACCGCGACCATAACCCGCACGTGACTCAACGAAATGCATTCCAAGTGCGGTTTAGTTTAAATGTGTGGGCTGGCATAATAGGGGACCACGTGCTTGGACCCTATTTTATCGACGGTTACCTCAACAGCGCCACATACCTGGAACTATTGCAAAACGTTGTCGAGGAGATGTTGGAGGACGTTCCCCTGGCACTCCATCGCAACTTTTTCTACCAGGATGGTGCCCCCCCCCTCACTACggtcggcaagtacgcgagtacttga
- Protein Sequence
- MPLIPAQDAQAVALIDQGLSQREVAIALNIPRSSLQYALKRYQETGQYTRRPSSGGVRCTSTRDDRFIVLVILRNRYLTAVEIPQQLQIARGVNGSERTVRRRMEEVNLKARRPARGLELLRQHRVARLQFAREHVNWTHEQWAGVLFRDECRIALRAPDGRERVWRRRGERFLPITTTQTVNFHGGSIMAWGGVSSDARTELVIVENRLTAVRDIEEVLQKNVMPYSGFIGHDQFLLMHDNARPHVAHCVEEYLEEVSIQNLQWPARSPDLNPIEHNRDMLKRKIKSSSNPPQTLNQLRTAALAAWGNILQVDVRNIIQIMPERVQAEDILEYFQREPRASTREAGRRFGVHQTTVWRLLRREQQHPFHYRKVQDLHPGDNAARVTFCRWLLEHQDANILWTDECLFTRVGVYNVHNEHWWAHRDHNPHVTQRNAFQVRFSLNVWAGIIGDHVLGPYFIDGYLNSATYLELLQNVVEEMLEDVPLALHRNFFYQDGAPPLTTVGKYAST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -