Nfla019972.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986044.1:72806029-72814161[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.4 50 5.2 2.5 2 23 238 260 237 260 0.91 2 17 0.11 4 8.6 0.8 1 23 363 386 363 386 0.97 3 17 9.1 3.4e+02 2.6 0.1 3 23 570 591 568 591 0.91 4 17 0.4 15 6.8 2.3 2 23 599 622 598 622 0.91 5 17 0.26 9.5 7.4 0.0 2 23 660 682 659 682 0.95 6 17 1.3e-05 0.00047 21.0 1.2 1 23 689 711 689 711 0.98 7 17 0.21 7.7 7.7 0.8 2 23 821 844 820 844 0.95 8 17 0.29 11 7.3 6.3 1 23 847 870 847 870 0.96 9 17 0.044 1.6 9.9 3.1 2 23 877 899 876 899 0.95 10 17 0.0014 0.052 14.6 3.5 1 21 992 1012 992 1013 0.95 11 17 0.0043 0.16 13.0 1.6 2 23 1025 1047 1024 1047 0.93 12 17 1.4 51 5.1 3.9 1 23 1050 1073 1050 1073 0.96 13 17 0.98 36 5.6 0.2 5 23 1082 1100 1081 1100 0.93 14 17 0.27 9.9 7.4 0.4 2 23 1134 1156 1133 1156 0.94 15 17 0.51 19 6.5 1.9 2 23 1165 1187 1165 1187 0.94 16 17 4.1 1.5e+02 3.7 0.6 2 23 1193 1215 1192 1215 0.90 17 17 0.22 8 7.7 1.0 1 23 1386 1408 1386 1408 0.97
Sequence Information
- Coding Sequence
- ATGGATGTTGAATCTATAGAAATGTTATCGGCAAAGTGTCGATTGTGCGGAGAAtcagataattttaattcagaTATATTTAGTGAGGAAGCAAGGCAACGTGAATTACCAAGGAAAATGGAAACATGCCTGCCAATAAAAATAACTGCAGAGAAGAATACTCcacataaaatttgtttccGATGTATTTacaaactagaaaatttttatgatttttacaaTCGAGTCAAACACACCGTGAAACATTTTGaaacaatgttaaaaaattCGTCATTAATATCAAAATCTTCAGATATATTTGATGATAAAGAAAACTCCAATGAAAGTCGAATAAATTTAGTTGATAAATGTACTGTTACTGATGAATTGGTATGTGAAATATGTAAATCAAAGTTAAGTTACATAAAGTATCACGTACCAAATAAATTAGTTGATTACGATTCAGATTCAAAGTCGAATAGTGGTGAGACAAGACTGACAGATAAGTTACATGAAAATCATTCcacttatacaaatattttaaatgaaatctcATTAAAGAAGACGACAAATCAAAAACGTACAattgatacaatttttaatacactcggtacaaaaaaacaaaaagtatcaAATGAAAGTATTGTGTACCCAGATGTGGTACAAACTGTTCCATCACGACGAAAGTcaaaacaaccaaaaaaaatcACTGATAAACCATCTGTGCAACAGACATGTTTACTATGCGATTTAAAATTTGGATCACATGAATTATTGGTCAAACATTTATATGAATGCCATGAATTGGAACCGAAAGAGATTTTTGATCCAAATCTAataacacaaacaaatatacagTATGAAAAAGAAATATCAAATGTAATTCGAATCACAGAACGTTTAAAAGCAACGGAAACACGACCACGATTAAAAGATGTTGTATCCGATGAATCTGAAGATACAGAGATCAATAATCGATTTGAGTTACCACAAATTCCAGTTCAAATTGATTTAGAGACGTTTGCACAACAGTTATGGACGGAACGACAATATTTCATGGAATCAACACAAATGATTTTAACAAATGGGTCGAATCAACGTGGATTGTATGTTTGTCAAATTTGTGCAAGAGATTTTCATGATAAATATACAATATGGTTACACTTAAAATCCATACATCCGAAACACGCCAGTTTAGCATGTGGCATttgtttacaattaaattttagttGGGAACAATTAAAGCAACATATTCAATACGAACATAATCCAAGTAAATTAACGTTAGCAGAAATACGAAAGTATTTCTGTGTAATTTGTTTACGACAGCACGattcaaagaaaaaattattaagtcatatttatatacatgaaTTTTTGGTTGATGCTTATAAGAAAAGTGGCATGTATTTTGATTcagaatgttttattaaaatgaacttTGGTGGTATTATAACGGAACAAGATGCAAATAATTACGAGGGTAAGAATGGAGCGGTGGATACATTGGTGTCGgatcaaaatttgaatattaaaaaaaataatggttttACTGATATATTGTACAATCAACTTACCATGGATGAAAATATCGAACAAGATATTGAAGaaatatctTTGAATGGAGATTATGAAGATAATCCTGATATGGAACCacctcaaaataaaattgaagaaaatgattcaaatacgcaaaaaACTCCACGAAATTATACATTAACTTACGGATGTGAATGGTGTTCCCGTACATTATCGAGTAAATGGGAACGATGGTTACATGTAGCATCAGCCCATGCACCTCATATTGAAACATTAAGATGTTCGATACCACATTGCGATAAAGTATTTGTAACGGAATCATTTCGAACTGAACATGAACAACATCATCAAGTACAAGGTCCCGTACCAAACTCATGTGAGGTCTGTTGTAAATTATGGAATACACGTGTTGATTTTTACAAACATATGATGGGTGTACATCCCCATGCGGTTCCTCTTGTGTGTGGTGTATgcttaaaaatatttccaacagTTCCAAATTTATACGAACATGTTCAAAGTTCGCATTTACCATTACAAGGTGATTTTGTTTGTAACATTTGTGGACGAAATTATTCAAACAAATCGAAAATGGTACGACATCGACGAATACATGGTGTAAATGAATCAGGAATGTTTGTACCGAATTCCATGAAACCAGGAAATGGGCAGCAACGGATACAAAGACGTGTTAAAACTAATGAAGGTACTAAATCCGGAACAACAAAATTCACAAATAATGAAACAACACCATCACCATCAATAATTGATACAAAAAATCTAGACAATAATTTACGTTCATCTGGTGATAATTCAAATCAATCTTTGCATGATAGCGAttcagaaaatgaaaattttgaatcaTATTCACCAATAACCACATCATATCCTACAccacaaaatatagaatcattATATCAAACACGTAATGAAAATTTCCAGCAATGTAAAGAATGTCCAAATTTAACATTCACAAATTATGATGAATTCTCCACGCATAGACGTTTAGTTCATCAAATATTCCATTGTGATTTGTGTATTAAATCATACGGTCGCAATTCTCATCTATGGAAGCATGTGAATCGTTGCCACAAAGGTAATAAGTTAATAACATGCCAACTATGTTTTAAAACTTCCGCATCAAAGTATCACTTACAACAGcactttaataaaattcatgCGTTAAAATCTGATCGTTTCAAATATAACAATTCACCACAATCGATCGAAAGTTTTCTTGATAAGAAATTTGATGGATACAGTTTTGAAAGTGTTAAACAAAGTTTTCTACGACAAGAATTATTAGAAAAAGAACAATTGAAGAATGACACAAAGTTGTCAGATACAATAACGGATAATTATACAAAAGAACCACCACAAGAGATTGATTTTAACAGTGAATTATACACAagtattattacaaattataatccACCAACGGTATCAACTGGACCGTATAAATGCTTAAAATGTAACAAAGGATTCACAAAAcgttatttattgaaaaaacataAGAAAAATTGTCGACCACGTTTACAAAAAGATTTATTAACACGTTGTAAATCATGTGAACGTATTTTTAAAGATCGCCAAAGCTTACAAAAACATTTAGCCAATTATCATTCAGAATTTAAATGTCATCTATGTATGATAACATTCCCTTCCAAATGTGAGATTATATCACATATACGATTCACACATCCAAATCATGTCGATTTTGTTTGCGAATGTGGACAAATCTTACGTTCATCAGATGATTTACAAGCACACAAATCCGATCATCGTAACAGTCATGTATGTCAATTTTGTGGTGATAGTTTACTcactaaaatgaaattaaagatgcatattttaagtttacatcgtaaaatattatcattgaGTTGTggcatttgtttaaaattatttgctacaCAACATGTATTACGTGATCACGTCAAATTAGTACACTTTCGAGATACTAAATTTGGTAATAGTTGTCCTGTGTGTGGTAAAAAATATGGATCAAAATGGAAATGCTTTGATCATATTAATAAATCacatggaaaaatatttaaaccatgtaaaatctgtttaagtgtaTTCGAAAGTGAGATACAATTACGTGATCATTTTTGTGCTGTACATTTAGGTGTAGTGGGTGGCGGCGGCtcaaatgattcaaatatagtACAGGCGGCACATGCCGTTGTTGATATTAAACCAAATATTAATGAATATCAGAGTAGTGATAACGATGAAGATGATCTACTAAGTGATTCGTCATTAAATTTACCACAAATaccaaaaataacattaacatCCAATAAAAGTCAACCGGATAATTATagtattgtaaataaaactgaTTATTATATTACTACACCGACAACAACACCAACAGTCAAATCACATCACTATCATCAAGCAAAACGTACCGTTTATGAGAATTCCGATGCACCATCAATGTgtgaaatatgtttaaaaacatGGCCCGCGAAAAAACATTTGTGGCAACATTATATACGCTGTCATAAATGTGATGCGGCCACGATTTGCGGTATATGCTTAAAAACACATACAACATATTTAGAATTGCGTAAACATTTATATGAGAAACATCCAAATTTATTACATGGACGTGGTTATAGTtcgaattttatttgtaaaatttgtggACGTTATCATAATGCTAGTTCCAAGTTAAAATTACATATGGCTATTCATGTCAATTATGATTTGACGGATGACTATGATTACAGTGTAATTAAACAGGAACCAACACAAAATGAAGAACAACTTTCACAATCAGCAATGATGATCACAACCAAACAAGAACAACAATTTGAGTCAGAGATAGAAGAAGAGGAAGAGGTCGAGGAGGAAGACGAAGAGGAGTATAAAACAGTTGCACAGCATAAAGAGAGTGATGTAGAAAATGAGTCGTCATTTACTGGCTTTAGTTTACAGCATCGTAAGAATAGTGAGAATTACTATCGAAATTATTCAAGTTTACTAGATTGTTTCCAAATAATGGAAACATCACCACCAAAGAATTTAATTAGTGATTTAGATGAATCGGATGATATTGATGTCATTAAATCCGATGATGAAGATGATGAGGATCAGGATGATGAACAGAATAGTGAGTGTGATTCGGAGGATGAACGACATTATTCTGATTTTGATGATGAAGATGATGAACTAAAAATTGATGAACAACCACCCACAAATGATGAAGAGCAAGAAACACCGCGTACAGTTGAAGATGATGATGATCAGAGAGCATCATCAAAATTAACAAATGATAGTGAATTCTCAAATTCGTATTATGATGGAACAACAACGTATAAAGATGATGAAGAcgatgaatcttcaggaagttCAGTTGATGATatcgatgatgatgatgatgatgatgaaacaGAGAAGCCAAATTTTGAAGTTGATCCGactaataatataattgttttaaaatatgacGATGGTAGAGAAGTGCGGTACGAGAATTTAAATATGGAATATGAAATTGTGAATGAGGAAATAGGTGGGCATGAAGAAGAGCATGTGAATGAAATTCAATATGAAGAAGTGTACgaacataaaaattatgatgTTGAGGATGAGGATGAGGATCAAACGTCTGTTATAGAGAATGCTATTAAAAGTATAAATGATTCATCGGATTTAGAGAATACAAATCATTCGGTACATACATACGATGAATTTGATGAACATATCGAGATTGTGGAACATTCACAGGATGAGCATGATTTAATGTTGGAAGAAGAAGTTGTTACTGAGGATGTAAGTGAAATTGAAACGGCTATCGaatctattttataa
- Protein Sequence
- MDVESIEMLSAKCRLCGESDNFNSDIFSEEARQRELPRKMETCLPIKITAEKNTPHKICFRCIYKLENFYDFYNRVKHTVKHFETMLKNSSLISKSSDIFDDKENSNESRINLVDKCTVTDELVCEICKSKLSYIKYHVPNKLVDYDSDSKSNSGETRLTDKLHENHSTYTNILNEISLKKTTNQKRTIDTIFNTLGTKKQKVSNESIVYPDVVQTVPSRRKSKQPKKITDKPSVQQTCLLCDLKFGSHELLVKHLYECHELEPKEIFDPNLITQTNIQYEKEISNVIRITERLKATETRPRLKDVVSDESEDTEINNRFELPQIPVQIDLETFAQQLWTERQYFMESTQMILTNGSNQRGLYVCQICARDFHDKYTIWLHLKSIHPKHASLACGICLQLNFSWEQLKQHIQYEHNPSKLTLAEIRKYFCVICLRQHDSKKKLLSHIYIHEFLVDAYKKSGMYFDSECFIKMNFGGIITEQDANNYEGKNGAVDTLVSDQNLNIKKNNGFTDILYNQLTMDENIEQDIEEISLNGDYEDNPDMEPPQNKIEENDSNTQKTPRNYTLTYGCEWCSRTLSSKWERWLHVASAHAPHIETLRCSIPHCDKVFVTESFRTEHEQHHQVQGPVPNSCEVCCKLWNTRVDFYKHMMGVHPHAVPLVCGVCLKIFPTVPNLYEHVQSSHLPLQGDFVCNICGRNYSNKSKMVRHRRIHGVNESGMFVPNSMKPGNGQQRIQRRVKTNEGTKSGTTKFTNNETTPSPSIIDTKNLDNNLRSSGDNSNQSLHDSDSENENFESYSPITTSYPTPQNIESLYQTRNENFQQCKECPNLTFTNYDEFSTHRRLVHQIFHCDLCIKSYGRNSHLWKHVNRCHKGNKLITCQLCFKTSASKYHLQQHFNKIHALKSDRFKYNNSPQSIESFLDKKFDGYSFESVKQSFLRQELLEKEQLKNDTKLSDTITDNYTKEPPQEIDFNSELYTSIITNYNPPTVSTGPYKCLKCNKGFTKRYLLKKHKKNCRPRLQKDLLTRCKSCERIFKDRQSLQKHLANYHSEFKCHLCMITFPSKCEIISHIRFTHPNHVDFVCECGQILRSSDDLQAHKSDHRNSHVCQFCGDSLLTKMKLKMHILSLHRKILSLSCGICLKLFATQHVLRDHVKLVHFRDTKFGNSCPVCGKKYGSKWKCFDHINKSHGKIFKPCKICLSVFESEIQLRDHFCAVHLGVVGGGGSNDSNIVQAAHAVVDIKPNINEYQSSDNDEDDLLSDSSLNLPQIPKITLTSNKSQPDNYSIVNKTDYYITTPTTTPTVKSHHYHQAKRTVYENSDAPSMCEICLKTWPAKKHLWQHYIRCHKCDAATICGICLKTHTTYLELRKHLYEKHPNLLHGRGYSSNFICKICGRYHNASSKLKLHMAIHVNYDLTDDYDYSVIKQEPTQNEEQLSQSAMMITTKQEQQFESEIEEEEEVEEEDEEEYKTVAQHKESDVENESSFTGFSLQHRKNSENYYRNYSSLLDCFQIMETSPPKNLISDLDESDDIDVIKSDDEDDEDQDDEQNSECDSEDERHYSDFDDEDDELKIDEQPPTNDEEQETPRTVEDDDDQRASSKLTNDSEFSNSYYDGTTTYKDDEDDESSGSSVDDIDDDDDDDETEKPNFEVDPTNNIIVLKYDDGREVRYENLNMEYEIVNEEIGGHEEEHVNEIQYEEVYEHKNYDVEDEDEDQTSVIENAIKSINDSSDLENTNHSVHTYDEFDEHIEIVEHSQDEHDLMLEEEVVTEDVSEIETAIESIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333690;
- 90% Identity
- -
- 80% Identity
- -