Nfla008412.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986041.1:95234336-95239551[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 7.9e-05 0.0029 18.5 2.0 2 23 182 204 182 204 0.96 2 13 2.7 1e+02 4.2 1.9 3 20 212 229 211 231 0.87 3 13 0.0023 0.084 13.9 0.3 1 23 277 299 277 299 0.98 4 13 0.97 36 5.6 2.2 5 23 402 420 400 420 0.96 5 13 1.5 54 5.1 0.7 1 10 448 457 448 466 0.94 6 13 0.00017 0.0061 17.5 1.5 2 21 559 578 558 579 0.94 7 13 0.69 26 6.1 0.8 2 21 607 626 606 627 0.92 8 13 0.33 12 7.1 0.3 3 23 636 657 634 657 0.85 9 13 0.00057 0.021 15.8 1.5 2 23 687 708 686 708 0.96 10 13 0.03 1.1 10.4 2.1 1 21 711 731 711 732 0.92 11 13 0.00071 0.026 15.5 0.2 3 23 772 793 771 793 0.96 12 13 0.46 17 6.6 3.9 1 23 806 829 806 829 0.93 13 13 0.00095 0.035 15.1 1.1 3 23 856 877 854 877 0.96
Sequence Information
- Coding Sequence
- ATGGTTGAGGAAAATTATGACTCTGCATGTAGGCTGTGTTTGAACTCCAACTCCAAGAATATTAATGTGTTTGAAAATAATTCGTATGCTGAGATTATCACAACAATTTCCACATCCTTATCAATAAAAaTAAGTCAAAACGAtgattttccgaaatttttaTGCACTGTTTGCATTGAGAAAATTGTTTCTTGGGATTCTTTTAAGAAATTGTGTACTGAAAGTCAAGAACAATTATATCAATGGAGAGAAAGAAAGTTTCAAAAGCAACATGAACAAGAGGCAAATGCAATTTCGACATTCTCGCGATTGGAAacgagCATTCACATAAAAGAAGAATTTATTGAAGATGATTTCGATGATAGTTTTGAATATACTTATGAAACTTTTACACCAgAATTTAGTATCAAAATCGAACCGAGATCCGAATCGGACAATTTTCAACATTCAGAAAAAAGTATTGCATCAAAAAAAAGTCCTGCTCCAGCTCTATCAAGGATACCATTCAATTACCAGTTAGTAATTGAAATGTATAAAGataatgtttgtaaattttgttcGAAGCAGTTCAATCGAAGTTCGAATTTAGTGCAACATTTACGGTTATTTCATATGATTGTACCAATGAATACATGTTTTTGCTGTGGAAAATCATATAAAACGAAATTAGAAGTTCAGACGCATCGTACTTTATGTAGAAAAAGGCTATCAcgcgaaaatgcaaaatattCCAATGAAGTTGAAGAAAAAGATGATAAATTAAAAGATCCGTTAAATATGACTGAAAAACAAGTTGAATCTACATCTACGGATTCATCTGACTATAAATTTTCGTGTAGTCTATGCGGAAAACTTTTTAAGACTATAGAAGAATGGACATTGCACAGAGCAACGCACgttcttaaaataaatgatgatGTGTCAAATAATGATGTTAttgatgaaaaaattgttttagaaCCTGCTAATACTGAAGCTGCGTTAGATCAAAGTTTCTCTGAAGTGCTGAATGATGTTAAAATACAAGACGTTCGTTCTGAAAGTGTTGTAACTGAACAGGTAACGGATGTCTctcaaaaagtttcaaatttaaCAGAGTCTATATCACAGCCAGCTAAAAAGTcgtcaaaatcaaaaaaaaaatttaaatcacgaGCTAAATTCacgaaatttagttttaaaacgaATGGTTTTTATCATTGCGAATGTGGTAGAAAATTTGATCGAGTTCAAGGATTTGCGTCCCACAGAAAATCTCATCAAAGAAGAGGAGAATTCTTTCCATTAAAATCAACCAATAAGAAAAGTAAAGAAGAAATATCTGAAAAAGTTgatgataaatttaaatgtcAGGGTTGTGATAAGATATTTTTGTTAGCCAGTAAATTtcgttttcataaaaaaagttgtGCCGGTTTTCCACAATTATTGCCTAAAAAATGTGAAACGGTGCTGCCAATTAAGGAAGTGGTAATTAAGTCAGAGGAACAAGGTATTACCGATACGAAAGCAGAAAATGTTAAACTCAATACTACTGATAATAGGGACCCAAATACCTGTTCTTTTTGTAAACGTAAATATGATAAAAGACATCGTTGTTTAAAGCATGAAAACACTTGTTTGCAAAGACCTAacgatttgaagaaatttattaaaatttatccaACTGCAGTGAAATGTGGTGGATGTGGTAAATGTTATGTATCTAAAAGTAATTATCTCAAACATCGGAATCGATGTACTAACGCAAGTTTAATTGAAGCTAAATTCAAAGACCAATTTACAGATGATGAATCTTCATCTTCGACAAATTCATTGCGTTGTTTTCTATGTAAACGGACGTTTTTATCACGTGGTGCTTTGACTGAACATAAGAAGCGATGTTACTTTCAACGCACATCTAGTTGTATTGAATGTAAAAAAGTATTTGATTCTTATATTAATTTTCGGATTCATTATGGACAAGCTCATGACAGAAAATCGCTAAGGCGAGCAAGGAGCTTAACTCAAACAGAAAAGCAGTGTCTTAATGTACCGAGCATACAAACAAATACATGGAtatgtaaaaaatgtaaaaaagtttttcaaactcgAAAAGGTTATAATTATCATATGAATATTCATGGTAAACATCATTGTCCTAATTGTAACAAGTATTTTTATCATGCGAAGAACTTACCGAGTCATATGGAAGTCTGTCAAAGTATTTCACCAGCAACTCATAACTTTGTTCAAAATGTAGCAGTCCGAGATCCCTTAGAAATAACACCATCACCATCGTCAAGCAAAACGATTGTTGGTGCTGCAGCACCTTGTGCTGTTTGTAAAATGTCATTTACGACAATTAGTGAATTGCGAGAacatattttaatgaaacataAACCAGCGTTTATACAAGAACgtaagaaaaaaacttatttttgtcaattttgtaaAATGGCATTTGATCGACATTTAGatttaaaacaacattttaatgaatatcATGCTGGTAATATGAAAAGTGATTATCCATCACCACCTGTACTGAAAGCGGAAGAACTACAAGACACAAATGACTCAATATGTACATTATGTCAATTATCTTTCGATACACAAGACGAACTATGTGTGCATGTGAATACTTTTCATAATATGGAAATGTGA
- Protein Sequence
- MVEENYDSACRLCLNSNSKNINVFENNSYAEIITTISTSLSIKISQNDDFPKFLCTVCIEKIVSWDSFKKLCTESQEQLYQWRERKFQKQHEQEANAISTFSRLETSIHIKEEFIEDDFDDSFEYTYETFTPEFSIKIEPRSESDNFQHSEKSIASKKSPAPALSRIPFNYQLVIEMYKDNVCKFCSKQFNRSSNLVQHLRLFHMIVPMNTCFCCGKSYKTKLEVQTHRTLCRKRLSRENAKYSNEVEEKDDKLKDPLNMTEKQVESTSTDSSDYKFSCSLCGKLFKTIEEWTLHRATHVLKINDDVSNNDVIDEKIVLEPANTEAALDQSFSEVLNDVKIQDVRSESVVTEQVTDVSQKVSNLTESISQPAKKSSKSKKKFKSRAKFTKFSFKTNGFYHCECGRKFDRVQGFASHRKSHQRRGEFFPLKSTNKKSKEEISEKVDDKFKCQGCDKIFLLASKFRFHKKSCAGFPQLLPKKCETVLPIKEVVIKSEEQGITDTKAENVKLNTTDNRDPNTCSFCKRKYDKRHRCLKHENTCLQRPNDLKKFIKIYPTAVKCGGCGKCYVSKSNYLKHRNRCTNASLIEAKFKDQFTDDESSSSTNSLRCFLCKRTFLSRGALTEHKKRCYFQRTSSCIECKKVFDSYINFRIHYGQAHDRKSLRRARSLTQTEKQCLNVPSIQTNTWICKKCKKVFQTRKGYNYHMNIHGKHHCPNCNKYFYHAKNLPSHMEVCQSISPATHNFVQNVAVRDPLEITPSPSSSKTIVGAAAPCAVCKMSFTTISELREHILMKHKPAFIQERKKKTYFCQFCKMAFDRHLDLKQHFNEYHAGNMKSDYPSPPVLKAEELQDTNDSICTLCQLSFDTQDELCVHVNTFHNMEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -