Nfla004315.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- ZCCHC4
- Assembly
- GCA_963920215.1
- Location
- OY986040.1:96203841-96218775[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8 3e+02 2.7 0.9 1 10 102 111 102 121 0.80 2 13 7.3 2.7e+02 2.9 0.1 8 23 448 464 447 464 0.91 3 13 0.033 1.2 10.2 3.4 1 23 549 572 549 572 0.97 4 13 0.00013 0.0047 17.9 2.1 1 23 588 610 588 610 0.99 5 13 6.1e-05 0.0023 18.8 0.6 2 23 628 649 627 649 0.97 6 13 0.00017 0.0063 17.4 0.8 2 23 679 701 678 701 0.96 7 13 0.31 12 7.2 0.7 2 21 711 730 710 733 0.80 8 13 1.8e-05 0.00068 20.5 3.7 3 23 742 763 740 763 0.94 9 13 3.7e-05 0.0014 19.5 1.9 3 23 771 791 769 791 0.96 10 13 1.8e-05 0.00068 20.5 0.9 1 23 797 819 797 819 0.99 11 13 0.0013 0.047 14.7 2.3 1 23 825 847 825 847 0.91 12 13 0.15 5.6 8.2 3.7 1 23 853 875 853 875 0.96 13 13 0.0015 0.055 14.5 3.2 1 21 881 901 881 902 0.96
Sequence Information
- Coding Sequence
- atgaataCCATAGCCGTAGAAGTAATTATCGAAGACAATAAAAAGCACCCGTATTGTTCTCACGGACCTACACTATTATTTTTACGCAATAAAGATAGTGGTCGAAAATTCTTTGCATGTGCAGCTTGCCGAGATCGTAAAGATTGTTCTTTTTTCCTTTGGGAAGATGAACTTTCTAAATTTAGTGatgtgaaaaaacaattttggaaCAATCAACGTTTACAGTTTTTAAAACAACTTCCATCTCACAACGATTTGTTTCTGAAATTTCATAAAATCAAACAAATACATCAATCAAAAAGATACTATTGTCATGATTGTCACGAATTGTTTTTGGATAGTGAACAAAATAGGCATAAAAATCACGAATTACTATCGAACATTTCATGTGAATTACTTGAAAATCCATCAAAATTTTTCCGCCCAAAAGATAACGCTAAAAAGGAGGCGCAATATTTATTTTCCGATACTGCggttaaaacaataataaacaatattattcatttaaaattcaggcATATTGTTTGTATTGGAGCACCAAGAATTCAtgaatacatacaaaataatcttTTAGATCAGGGTTACAGTAGTCTATTGTTGGATATTGATGAAcggtttcgaaatttttttgggCCTTTGCAGTTTTGCTTATACAattcatttaatcattatttCTTTGAAGGGAAAACTTCAGAAAgtgtatttaaagattatttacaAACTGATAAcgGGAATGGTATTGCAATTGTAACAGATCCTCCGTTTGGAGGGCGAATAGAAGCATTGTCAGATggaatacaaaaaataacaactcaatataaaaatttaaataaaatttcaaaagattTACCAATTTTATGGATGTTTCCATATTTTATGGAATCTCATATTCTTAAtagttttccaaatttttcaaTGTTAGACTATAAAGTCGATTATGATAATCATAGTTTATTTACTGACAAACCCAATGGTCGTAAAAATGGATCACCTGTACGCATATTTACCAATATTATTCCAAGtaaattcattttgaccTGCGAAGAAGGCTACAAATTCTGtggtttatgtaaaaaatgggTTTCACAAGAAAATCAACATTGCACAATTTGTAACGACTGTACATCAAAAAATGGAACAACCTACAAACACTGTAATATATGTAATCGATGTGTTAAACCATCTTGGAGCCATTGTTCAACGTGTAATCGATGTTGTCTCCAAGATCATAAATGTGgtcaaattgaatataataataattgttttcattGTAAATTACCGGGCCATAAAAAAACTGATTGTCCGAATGTTAATAAACGATCTTTGAAAAGAAAACGCCTTAAAGCATTTTCAAAGGATGAATATTTACAAAAGCATATAATTAACAAAcatgaaattacaaaaaatgaaaCAGTCGATGCTCTTAGTGATAGTCATTTAATTGATAACACTCTAtctgaaaatactaaaatagaaaccattgacataaaaattgaatcaaatgtAATTGAAGTAGATTACCACTCAAATGATGATCATGCTGATATAAATACGGAGGATATTGAAGAAAGTGCAATAGAGGATATaccaaaaacaattgaaattgaACATAATGagtataaatgtagaaaaaaaatacaaatttataaatgtacaaaatgttCCGAACGTTTTATAACATCACAAAGATTAACATTTCATATGAAAAGTAATCATAACACAAATAATGATGATAATAGCATTAACGATAACGATAGTACTTATAAATGTTCAAAATGTTTCCGGACATTTCAACGACCACAAGGTTTATCTATTCACATGAAATCACATGACAaggataaattcattttaaacgGTATGTACACACTCGATGGTCAATTACAATGTCCGGTCTGTTCAAAAACGTATGCATCGTATAAAACCTTACGAAAACATGTGAAAGTTCATAAAAATGGAGAAAATGAAATTGATATTGATGAGAAAAACGATATAGATAATGAACGAACGAATGAAAAtttaatcgaaaataatttaatatgtacaaagtgttcgttaaattttacaaactacgatgaattaaataaacatataaagaaaatacatgacaatgaaaatttgaataaaaaatggtCATGTGACATATgtaaaaagaaatttagatatgaaaaatcacGTGATATTCATGTTACGGAACAACATAATGGTCGTTTTCGATCCCATTTATGTACAATTTGCGGTAAATCGTATAATAGAAATCAACAGTTAAGAGTTCATATGCGTCATGTTCATTCTGGTATAAAACCACACTTATGTAGTGTTTGTGGTAAGGCTTTTTCAACAAAACGGTTTTTGGAAGCTCATTCAAGAAcacatactaaagaaaaaccATTCAAATGCGACGAATGTGGTAAAGGGTTTATTCATAAACCAAACATGATTGAACATAAACGTATTCATAGTGGATTAAAACCACACATATGTACCGAATGTGGTAAACAATTCACACATTTGACTGGTCTTAGACAACATGCTGTATATCATACTGGAATCAAGAAATATAGTTGTCCTATTTgtgatcaaaaattttattttaaaaacaaatgcgATGATCATATGCGATTACATTCTGGCGAACTACCATATAGTTGCAAAtactgtgataaaaaatttcgaatttgtAATGGCTTAAAGAGACATACTCGTGCATGTCGTGGTATTCGAGATTTTAAATGTAATatcgAATTAATCATTACAAATCGGAGTATCGAATAG
- Protein Sequence
- MNTIAVEVIIEDNKKHPYCSHGPTLLFLRNKDSGRKFFACAACRDRKDCSFFLWEDELSKFSDVKKQFWNNQRLQFLKQLPSHNDLFLKFHKIKQIHQSKRYYCHDCHELFLDSEQNRHKNHELLSNISCELLENPSKFFRPKDNAKKEAQYLFSDTAVKTIINNIIHLKFRHIVCIGAPRIHEYIQNNLLDQGYSSLLLDIDERFRNFFGPLQFCLYNSFNHYFFEGKTSESVFKDYLQTDNGNGIAIVTDPPFGGRIEALSDGIQKITTQYKNLNKISKDLPILWMFPYFMESHILNSFPNFSMLDYKVDYDNHSLFTDKPNGRKNGSPVRIFTNIIPSKFILTCEEGYKFCGLCKKWVSQENQHCTICNDCTSKNGTTYKHCNICNRCVKPSWSHCSTCNRCCLQDHKCGQIEYNNNCFHCKLPGHKKTDCPNVNKRSLKRKRLKAFSKDEYLQKHIINKHEITKNETVDALSDSHLIDNTLSENTKIETIDIKIESNVIEVDYHSNDDHADINTEDIEESAIEDIPKTIEIEHNEYKCRKKIQIYKCTKCSERFITSQRLTFHMKSNHNTNNDDNSINDNDSTYKCSKCFRTFQRPQGLSIHMKSHDKDKFILNGMYTLDGQLQCPVCSKTYASYKTLRKHVKVHKNGENEIDIDEKNDIDNERTNENLIENNLICTKCSLNFTNYDELNKHIKKIHDNENLNKKWSCDICKKKFRYEKSRDIHVTEQHNGRFRSHLCTICGKSYNRNQQLRVHMRHVHSGIKPHLCSVCGKAFSTKRFLEAHSRTHTKEKPFKCDECGKGFIHKPNMIEHKRIHSGLKPHICTECGKQFTHLTGLRQHAVYHTGIKKYSCPICDQKFYFKNKCDDHMRLHSGELPYSCKYCDKKFRICNGLKRHTRACRGIRDFKCNIELIITNRSIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -