Nfla021034.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:18265537-18267006[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.5e-05 0.00095 20.0 0.5 2 23 241 262 240 262 0.95 2 8 0.00063 0.023 15.7 3.6 1 23 268 291 268 291 0.98 3 8 7.3 2.7e+02 2.9 0.2 2 8 299 305 298 320 0.86 4 8 9.5e-06 0.00035 21.4 2.0 1 23 327 350 327 350 0.96 5 8 0.00074 0.028 15.4 1.3 1 23 357 380 357 380 0.95 6 8 2e-05 0.00074 20.4 2.5 3 23 388 408 386 409 0.94 7 8 0.0008 0.03 15.3 4.6 1 20 415 434 415 437 0.93 8 8 3.8e-06 0.00014 22.7 0.6 1 23 443 466 443 466 0.96
Sequence Information
- Coding Sequence
- ATGAATCATTCAGTAAGTTACAAAGATTTTGACTCAATATGCCGTATTTGTTTAAATTCCAAAGATGTTGAAATGCTATGTTGGAATCTTGAAATAATTCATATGTTAGAGGCATGTTCATCGGTAcaggaaacaTTAGATGCAAAATTTCCCAAACACGTTTGCACTACCTGCTACGATCAATTGAAACATTGCTTTCAATTTCAACAACAATATTTACtatcaatacaaattttaacagatattattttaaaatcagaagagagtaataaaaatgattcatcgATTAAAAATGAAACAGACGACgatgaaaaatttgatatttcgaCAAATTTCACTTTACCCCTTGATGTAGACATTATTAAAAAAGAGGAGAATAATGATTTAGCACCCTCCACTGTTAAATCATCCGACATAAAACAAGAGATTTCTGTGAAACGAAAACGAATACccgtgaaaaaattaatttacactaAACACAAACCTAGGGCTATACTTCGACGTAAATTCAAAGATAAATCAAAACCAATTTCATCACCTGAACCACCATCTCCGATACCAGATACAGACGAGATTTTTAACAATGATAACGATTCCGGCGATGAATCATCATGCAAAGAAGATATTGCAAGTGAAGAAGATATTGATTTTCAAATACCTCAGAAGAAAAGTAAAGGACGGAAAGGTCGACCGAGTATACAGGATGATCAAACTGAATGGATATGTGATATTTGtgggaaaaaattttcgaaaaaagtttatatgaaaaaaCATCAAGTAATACATTCAGAAAATCGTCCATTTGAATGTTATATCTGTcacaaaacattcaaattgaaaTGGAGCATGAAAGAGCATGTTAAAACACAACATACGGAGCGTGATAAACGTGTTATGTGTCCGATATGTGGCAAATTAATATTaccaaaaagtataaattatcataaaaataagtATCACAAAGAGAACAAAGAGAAATTCAAATGCGATAAGTGTGATCGACAGTATACACAAAAGAGTGGTTTACAAACGCATATCAAAGAGAAACATATGGAGAATGATACAatgtatttttgtgatatatgtaATAAAGGTTTTGTATTAAAAGGCTCGTTAAGGATGCATAAAAAGTATACACATATGAAAGAGAAAAATCTGGCATGTACAATATgtggtaaaacatttaaaatgttaaGTAATATGAATCACCATATAAATgcacatcataaaaatttaaaaccacaTGCGTGTACAGTATGTAATAAagcattttatacaaaattcttGTTAAAGAAACATATGATTTGCCATACTGGCGAGCGACCATTTACATGTACAATTTGTGGGAAATCGTTTGGATTTAAAAGTGTGTTAACGACACACATGAAGGGTGTTCATTCGAAATCAtga
- Protein Sequence
- MNHSVSYKDFDSICRICLNSKDVEMLCWNLEIIHMLEACSSVQETLDAKFPKHVCTTCYDQLKHCFQFQQQYLLSIQILTDIILKSEESNKNDSSIKNETDDDEKFDISTNFTLPLDVDIIKKEENNDLAPSTVKSSDIKQEISVKRKRIPVKKLIYTKHKPRAILRRKFKDKSKPISSPEPPSPIPDTDEIFNNDNDSGDESSCKEDIASEEDIDFQIPQKKSKGRKGRPSIQDDQTEWICDICGKKFSKKVYMKKHQVIHSENRPFECYICHKTFKLKWSMKEHVKTQHTERDKRVMCPICGKLILPKSINYHKNKYHKENKEKFKCDKCDRQYTQKSGLQTHIKEKHMENDTMYFCDICNKGFVLKGSLRMHKKYTHMKEKNLACTICGKTFKMLSNMNHHINAHHKNLKPHACTVCNKAFYTKFLLKKHMICHTGERPFTCTICGKSFGFKSVLTTHMKGVHSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333423;
- 90% Identity
- -
- 80% Identity
- -