Nfla013232.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- lola
- Assembly
- GCA_963920215.1
- Location
- OY986042.1:97055150-97083074[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.024 0.89 10.7 2.6 1 21 34 54 34 55 0.94 2 11 0.0013 0.047 14.7 2.0 1 21 71 91 71 92 0.93 3 11 0.00051 0.019 15.9 2.2 1 21 100 120 100 121 0.95 4 11 0.001 0.038 15.0 0.6 1 21 127 147 127 148 0.96 5 11 9.7e-05 0.0036 18.2 0.8 1 22 156 177 156 177 0.96 6 11 0.00038 0.014 16.3 2.2 1 21 184 204 184 205 0.97 7 11 0.00014 0.0053 17.7 0.2 1 20 213 232 213 234 0.93 8 11 0.0043 0.16 13.0 0.4 1 21 249 269 249 270 0.95 9 11 0.16 6 8.1 2.8 1 17 278 294 278 295 0.93 10 11 0.046 1.7 9.8 0.5 1 21 298 318 298 319 0.91 11 11 0.12 4.6 8.4 2.6 1 22 327 348 327 348 0.95
Sequence Information
- Coding Sequence
- ATGATGTCATTGCTACTTTTGTGTACTCGAAATTTCAATCGTTTAATCTTTGTAGCTCGGAGCGTACAAATATATGAATCATCATTAAatgaaaaacgatttttttgtgGCAATTGTGATCGGTCATATCGTTATAAGACCAGTTGGTATAAACATCGGAAATATGAATGCGGCAAAGAGCCAATGTTTCGTTGTGGGGATGAAGCACGGCACTTTTGTCCTGATTGTGGTAAATCCTATAAGTTTAAACAAGGATTATATGAGCATCGTAAATTTAAATGTGGGAAGAATCCATCATTTCAATGTCCATTTTGTCCAAAACGATGTTATGTTAAAGGGCATTTACGTCAACACATATTatcttataCAGGAATGCGTTATGAATGTCCAGTGTGCGggaattcatataaatataaacagggTTTATACACACATCGCCGGTTTCGATGTGGCAAAGATCCAACATTCAAATGTCCATATTGTCCAAAACGTTGTTATGTTCGTGGTGATTTACAACAGCATATTTTGACATacaatttacgacaaaaatatGAATGTGAAAAATGTGGAAAAGCATATAAATCTAGATGTGGATTATATTCCCATCAACGGTTTAAATGTGGAATAGAACCGCAATTTAAGTGTCCATTCTGTCCAAAACGTAGCACTGAAAAGGGAAATTTACAACGGCATGCGATTACATGTAAATCATTGTCAAAACCAACACACCATCAGAATGGAAGATATTATTGTCCGAATTGCCCAAGATCATACAAAGCTTCAAATGGATTGtatcaacatttaaaatatcaatgtgggaaagaaaaaatgtttcaatgtcaattttgttcaaaacgatttttttataaaactCATCTAATAAATGGACGATATGTTTGCCCAAATTGTCCTAGATCTTATAAAGGTGCCTGTGGTTGGTATCAACATTTAAAACATGAATGTGGAAAAGAACCAAAGTTTCACTGTGATACGTGTAGTTATAAAACTCATAGACGAAGTTCAGTTGTGAATCACATGAGAATATGCCGATATCGATTACCATTACAAAATGATATTGTTGGTTATGCAAATGATACaattgtgaattaa
- Protein Sequence
- MMSLLLLCTRNFNRLIFVARSVQIYESSLNEKRFFCGNCDRSYRYKTSWYKHRKYECGKEPMFRCGDEARHFCPDCGKSYKFKQGLYEHRKFKCGKNPSFQCPFCPKRCYVKGHLRQHILSYTGMRYECPVCGNSYKYKQGLYTHRRFRCGKDPTFKCPYCPKRCYVRGDLQQHILTYNLRQKYECEKCGKAYKSRCGLYSHQRFKCGIEPQFKCPFCPKRSTEKGNLQRHAITCKSLSKPTHHQNGRYYCPNCPRSYKASNGLYQHLKYQCGKEKMFQCQFCSKRFFYKTHLINGRYVCPNCPRSYKGACGWYQHLKHECGKEPKFHCDTCSYKTHRRSSVVNHMRICRYRLPLQNDIVGYANDTIVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -