Nfla021390.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:30363870-30365169[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00021 0.0077 17.2 2.9 1 21 127 147 127 150 0.90 2 10 0.0019 0.069 14.2 1.3 1 23 157 180 157 180 0.93 3 10 0.064 2.4 9.4 1.2 2 23 183 204 182 204 0.90 4 10 0.0017 0.064 14.3 1.1 3 23 213 234 212 234 0.95 5 10 7.3 2.7e+02 2.9 0.0 3 10 244 251 242 262 0.81 6 10 4.8e-05 0.0018 19.2 1.1 2 23 268 290 267 290 0.94 7 10 1.7e-05 0.00064 20.6 0.2 1 23 298 321 298 321 0.90 8 10 0.11 4.2 8.6 1.0 1 23 327 350 327 350 0.93 9 10 0.0002 0.0076 17.2 5.9 1 23 356 378 356 378 0.98 10 10 0.00075 0.028 15.4 0.3 1 23 384 407 384 407 0.96
Sequence Information
- Coding Sequence
- ATGACTCAAAGTTTTAAATGGTTTTTAGGAAACACAAGAAATCAATGTGAATCATCCAAAATCATTTTAGAAAAATCTTTATgtgataatattgaaaataaaaatgatgttcaattgtcaaattttgtatcacCAGATGTAAAATTGAACGATTTCGTAGATGTAGAAAAATCAGTGAAAACTGAAACGTTAGATGAAACACAACAGTTATTTGAACAAATCGATAATAATTCACCGCCACAatttacaaacgatattaaAGATGAGATTGATGATGTAGATGATATATTTAGCCCCATCGATGATGATAGATCCATGTCACCATTAACAAAAGACATTAAACCAGAAAATGATGAAGCCGTTTCTAAAGATACTACCTTCAAATGTGATTTTTGTAGCAAAGTATTTCGTTCAGATAGTAATTTAGCACGTCACAAATATTTTACACACGGCGTcgttaaaaatgtatttccgTGTAAAAATTGTAGTCGAATTTATAGTTCAAAAGACgatttagataaacattttttgaatcgACATGAAACTGTATGTAATgtgtgcaataaaaaatataagaataatttaattttacggagaCATAAAGTGCAACATCAAGTAGATCGGCCGAATAACTATTGTCGAATATGTCAGAAATTTTATGCAAATCGGGATTCGTATAGtattcatatgaaaaattatcACACAGAAGttccaaaaaagaaaatcatCTGTTCGGAATGTGGACGATCTGTATTCGATATTGCGGCACATATGACAAATGTCCATAAAAGTAAAGAATTAAAATGCTCATACTGTGAAAAGacatttaaatataagaaaactTTATTGGCTCATGTTGACATGATGCATGAAAAATCAAGTAACGTACaatttttatgtcaaatttGTGGTAAAGTGTTTAAAGAAAAGGGTGCGTTAAAACGACACGGGAAAGCTGTACATTCCGatgagaaaaattatcaatgTAGTTTTTGTGAGAAAAAGTACAAagcaaattatttgaaaattgaacaCGAAAAAATTGTACATTTAAATTATAAGCCACATAAGTGTGAACATTGTACCAGATCATTTTCAAggaaatcaattttattgaatcatgtTCGAACACATACCGGTGAAAAACCATTTGTATGTTCGATATGTTCACGTGCATTTGGTCAGGAAATTACGCTTAGAACTCATCGAAAATTGGTACATGGAATTCATATGAAATAA
- Protein Sequence
- MTQSFKWFLGNTRNQCESSKIILEKSLCDNIENKNDVQLSNFVSPDVKLNDFVDVEKSVKTETLDETQQLFEQIDNNSPPQFTNDIKDEIDDVDDIFSPIDDDRSMSPLTKDIKPENDEAVSKDTTFKCDFCSKVFRSDSNLARHKYFTHGVVKNVFPCKNCSRIYSSKDDLDKHFLNRHETVCNVCNKKYKNNLILRRHKVQHQVDRPNNYCRICQKFYANRDSYSIHMKNYHTEVPKKKIICSECGRSVFDIAAHMTNVHKSKELKCSYCEKTFKYKKTLLAHVDMMHEKSSNVQFLCQICGKVFKEKGALKRHGKAVHSDEKNYQCSFCEKKYKANYLKIEHEKIVHLNYKPHKCEHCTRSFSRKSILLNHVRTHTGEKPFVCSICSRAFGQEITLRTHRKLVHGIHMK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333392;
- 90% Identity
- iTF_00333392;
- 80% Identity
- -