Nfla022490.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:68092809-68098252[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.019 0.7 11.0 0.1 2 23 5 26 4 26 0.97 2 15 3.1 1.2e+02 4.0 3.5 1 23 937 960 937 960 0.90 3 15 1.1 41 5.5 1.0 3 23 1036 1057 1035 1057 0.96 4 15 0.45 17 6.7 4.5 1 23 1065 1087 1065 1087 0.98 5 15 0.0026 0.096 13.7 0.7 2 23 1090 1112 1089 1112 0.96 6 15 0.12 4.4 8.5 0.5 1 23 1130 1153 1130 1153 0.97 7 15 2.7e-05 0.00099 20.0 0.7 1 23 1161 1184 1161 1184 0.96 8 15 0.78 29 5.9 1.0 5 23 1196 1214 1194 1214 0.94 9 15 0.0011 0.041 14.9 1.0 3 23 1221 1242 1220 1242 0.97 10 15 0.025 0.92 10.6 0.1 3 23 1260 1279 1258 1279 0.97 11 15 0.00016 0.0058 17.6 1.0 1 20 1285 1304 1285 1307 0.92 12 15 0.0011 0.04 14.9 1.2 1 23 1315 1337 1315 1337 0.99 13 15 0.0016 0.059 14.4 6.8 1 23 1343 1365 1343 1365 0.98 14 15 3.4e-05 0.0013 19.6 4.1 1 23 1371 1393 1371 1393 0.99 15 15 0.00055 0.021 15.8 8.1 1 23 1399 1421 1399 1422 0.96
Sequence Information
- Coding Sequence
- atgaatacaATCGTATGTCCAGTATGTACGTTATATTTACGTAATAATATAACATTAGAGGAGCATTTACGGACCCATCCAAAGGCGAAAGTCATTGAAGCATTGATTTCCGTGtcaagaaaaaatgtttcacagCCGCAACTGCAAGCAGCACCTCCGCAAATTACCATACCACCATGGCAACAGACGACAACTCTACAAACCAACAATTCAATATTGGTACCAGTTCAATCGAATAATTCATCGATTATTTATCAACAGTTTGTGTCAAGTAACACAACTCATAATTGTTTGGCACCCACGATGACTGTACCCCAATATATAACAATACCCACAAATGGGTTTAATCAACAACCGTTAATTATGAATCAACAACCTTACTTGTATCagcatcaacaacaacaacaggtTCAGTTGATGAGTGCTCCAATGGTACCTGTTGGATATAACTATCAAACAGATCCACTCCATAATACGACGAGTGAAACTGTTGAATCGATTCTACCCGAAATATCAGACGAAATGTATCCTCCAATTGTTCGACAACCTGTAATATCGATTCATCATAAATCATCTGAACCAATCAAGAATATTCTTCATTCGAGCATTCAATCAACAAAACCAACAGTTGCTGAATCGTTTAATTCAACAAACACAACATCTCAATCAATGTTGACGTCATCTGTAATCGATTTGACGTCATCTGCAATCGATAAATCACTTCCTGAATCGAATCAATCGATTACATCTCAATCAATGGTGACGTCATCTGTAATCGATTTGACGTCATCTGTAATCGATAAATCACTTCCTGAATCGAATCAATCGATTACATCTCAATCAGCAATATCTGAACcattaatcaataaatcaacAATAATATCAGAACCTGTAATCATTAAATCAACAATATCTGAACcattaatcaataaatcaacAATAATATCAGAACCTGTAATCATTAAATCAACAATATCTGAACcattaatcaataaatcaacAATAATATCTGAACCTGTAATCATGAAATCAACAATATCAGAACCTGTAATCATTAAATCAACAACATCAGAACCGGTAATCATTAAACCAACAATATCAGAACCTGTAATCATTAAATCAACAATATCAGAACCGGTAATCATTAAATCAACAATATCAGAACCGGTAATCAATAAATCAACAATATCAGAACcaataatcaataaatcgataatagCTCATCATGTAATCAAGAAGTCAATAGCATCTGAACCGATAGTTAATAAATCAATCATAACTCAATCcataatcaataaatcaatggTATCTGAACCAGTAATCATTAAATCAACAAGTCAATCGATTATAACACAACCGATAATCAATAAATCGACGATAATATCTCAACCGAAAACGacaatattaattgaaaaatcatCATCATCGTTAATCGATAAATCATCGATTATTATACCTCAATCAATAACGACGACGTCGTtgttatcatcatcatcatcatcaagtCATCATCAACAAATTGATCGATCAACCGTAGTTTGTACAACGAAAAAATCAAATACACCGCCTGTATCCGTGTCAACAATTCAATTAGCCGATATTACCATCAGCACGGAAGTACTACCAAAAGATCCACAAAAATCATCTGCCGCAGCAACCAATAACGAATACATGAATTCCAATCAAATGGAAATTATtccaatttataatataaataataagaaacaaccGGCAGATCATCCGCTAGATCCAGATGATATGATGATGGATCAAAGTAACATTAAATCTGATGACTCAGAAATCAAAGTGAATAAAAAGACTGTAATCGAAGTGTATTCGAATGAAAGTACACAACATCAAAAGCAGCAACAATTTTGTGAGAAACTGGACTTGATTGAAACGTTCCATGAAAATGAGAAACATGAAGATCAGATCGATAATGAAGAACATGAAACCACCGCCGAACCACAAGATTCTGATTATATTCTACCGGATGTCTCATTCTATCAGATCTCAAAGTTTGAGGATATGACCATGGAAACGAAAGAATCGTCACGGAGTCTTCCAGAAACTAAAAATGATATTGTCATCATTAAGAATGAAGTGATCTCGTTACCACCCACAAAAATTACATCAGTTTTCCAACCGCCATCGTCGTACAACGACGAAGAACAACATCACCACCATCACGACGAGGAAGAGGATCCCTCCTCATTTAAGGTTGAACATATCGAATCGATGGTGGCGGATGATGCTTATGCAGAAGTTGTTGAATTCGGTGATATTAAATTAATGCTAAATAATGATATGTTAAATCCGGCGGCTGGTGGAACAACTGCAACGATTGTCAACGATTTACATTGTATGGAAGATATTTATGATGATGATAAATCGTCACCGGTTTTGCTGAATATCGGGGAAATCGGCGGGGTTGTTACGAATAAATATGATAGCTATCATGATGAGAATATGATGCAGCAGCATGAAGGGGATGATGCTGTTAGTGGTGCTCATGAAAATTATTCGAGGGATAGTTTAAATATACGGGCGGATGAATGTATGCCACCAAAAGGTGAATTGTCGGAGCAAGAAAGTAATGGGGCTGGCGATGAAGAAGTTTGGGGAAAGATGTTTCAAGAAGGCAGTTCGGGAATATCAACATCATACGATTTAATTGCACGTGAAAGTTGGGAAGCCTCCGATTCATCAGATTCCGAACTAACGCCACCGCTACAAAGTCGAATCTCCCCAGCCGATAATAATCTGTCGAGTAAGAGTCAACAATTAGATCCAAGTAAAAAAGTTGTATACAAATGTAGTTACTGtaaagaaatattcaattgTCCGAAAGAACGTCGTGTCCATCAAACGAACATGCACGATCACGACGACAAAACAAACTACGAGAATGATGAAATGGAAGACGACGGTTTGGAGGATGGAAATCAAGTGGAGGATTGCATGGAGGAAGAATGTGAAGAAGACAACGATACGAAAAATATCAAAGTCGAAGATGTGAAAATCATGGAACCAACAGAGCCAAAAATTGAAGTCGATCCAAAAATCAATATACAAAGAATGATCCAAAACGCCAAACTACGGCATTGTGAACTATGCCTCCTAGAATTCGAGACAAATGACCGCTTCAACGAACATTATCGTATCGAACATCCAACCCTCCCGATACCCCGCTATAAATGTAGTACGTGTCAATTGACCTTCACTTTGGAATGTAAATTCTCACTACATTTAAAAATCCATCCGCTAGTTTGTCAAATCTGTTACAAGCTATTTTACAAGCAACAAAGTTTACAAATCCATCTGCGACGCGTTCATCTAGCGAAACATGATGTCACTTCCACTACCGGTACCGCCGATGCAAAGAAGTACACGTGTGAAGTATGCCTGGAGAAGTTCACAACATACGCTCAAAAGATTGGTCACATCAATTCGAAGCATGCCGATGTGGCAGCCACAATGTTTAAGTGTGCCATATGCGGTGAAGCATTCCGTCGCCGCAAAACGTTGAAACAACATCGTGACTCAGTCCATCAGAAACGAAAACCACAGCGTGATTATGTCTGTCATTGTGGCGAGACATTCAAATCGAAGAATCGTTATTCGTGGCATGCCGAAATCCACGAGACCAAACCGAAAGCTTGTACATTCTGTAGTGAGAAATTTGTGCATACGGCCAGTTTAACACGTCACATACGTATCGCACACAACGAGAACTATATACCGGATGCCAATCGTCGCGTGAGTGAGAATATTGCGTGCCCGATTTGTAAGAAAATGTATCTGAAATCATCGTTAGATGTTCATATTAAAATCCATACGGGTGTCAAACCATTCTCGTGTGTCATCTGTAACAAAGTGTTTACAACGAAATGGAATCTAAAGTTGCATAAGTGGACGCATGCGGCGCGTCTCTCGAAGCCGTACAAGTGTACACAGTGTCAGAGTGCATTCATACGACAGAATGATTATGTGTCGCATATGAACTCACATCGGAATATTAAACCGTACACGTGTAATCATTGCGGCAGACAGTTTATACGCAAGTATAATTGTCAGCGGCATGTGCGCGAACATGAACGTGATAAATCGTATAAGTGTACAGTGTGTAATAAGGAGTTTCATCGTTCGTATTATTTGCGTGAACATTTACGGGTGCATAGTGGTGATCGTCCATTCTCATGTCATATATGTGGTAAGACGTCCACAACGAAATCGAATCATAACAAACATATGCGGATACATCATGCACGGGATCCGGTTAGCaccgaaaattaa
- Protein Sequence
- MNTIVCPVCTLYLRNNITLEEHLRTHPKAKVIEALISVSRKNVSQPQLQAAPPQITIPPWQQTTTLQTNNSILVPVQSNNSSIIYQQFVSSNTTHNCLAPTMTVPQYITIPTNGFNQQPLIMNQQPYLYQHQQQQQVQLMSAPMVPVGYNYQTDPLHNTTSETVESILPEISDEMYPPIVRQPVISIHHKSSEPIKNILHSSIQSTKPTVAESFNSTNTTSQSMLTSSVIDLTSSAIDKSLPESNQSITSQSMVTSSVIDLTSSVIDKSLPESNQSITSQSAISEPLINKSTIISEPVIIKSTISEPLINKSTIISEPVIIKSTISEPLINKSTIISEPVIMKSTISEPVIIKSTTSEPVIIKPTISEPVIIKSTISEPVIIKSTISEPVINKSTISEPIINKSIIAHHVIKKSIASEPIVNKSIITQSIINKSMVSEPVIIKSTSQSIITQPIINKSTIISQPKTTILIEKSSSSLIDKSSIIIPQSITTTSLLSSSSSSSHHQQIDRSTVVCTTKKSNTPPVSVSTIQLADITISTEVLPKDPQKSSAAATNNEYMNSNQMEIIPIYNINNKKQPADHPLDPDDMMMDQSNIKSDDSEIKVNKKTVIEVYSNESTQHQKQQQFCEKLDLIETFHENEKHEDQIDNEEHETTAEPQDSDYILPDVSFYQISKFEDMTMETKESSRSLPETKNDIVIIKNEVISLPPTKITSVFQPPSSYNDEEQHHHHHDEEEDPSSFKVEHIESMVADDAYAEVVEFGDIKLMLNNDMLNPAAGGTTATIVNDLHCMEDIYDDDKSSPVLLNIGEIGGVVTNKYDSYHDENMMQQHEGDDAVSGAHENYSRDSLNIRADECMPPKGELSEQESNGAGDEEVWGKMFQEGSSGISTSYDLIARESWEASDSSDSELTPPLQSRISPADNNLSSKSQQLDPSKKVVYKCSYCKEIFNCPKERRVHQTNMHDHDDKTNYENDEMEDDGLEDGNQVEDCMEEECEEDNDTKNIKVEDVKIMEPTEPKIEVDPKINIQRMIQNAKLRHCELCLLEFETNDRFNEHYRIEHPTLPIPRYKCSTCQLTFTLECKFSLHLKIHPLVCQICYKLFYKQQSLQIHLRRVHLAKHDVTSTTGTADAKKYTCEVCLEKFTTYAQKIGHINSKHADVAATMFKCAICGEAFRRRKTLKQHRDSVHQKRKPQRDYVCHCGETFKSKNRYSWHAEIHETKPKACTFCSEKFVHTASLTRHIRIAHNENYIPDANRRVSENIACPICKKMYLKSSLDVHIKIHTGVKPFSCVICNKVFTTKWNLKLHKWTHAARLSKPYKCTQCQSAFIRQNDYVSHMNSHRNIKPYTCNHCGRQFIRKYNCQRHVREHERDKSYKCTVCNKEFHRSYYLREHLRVHSGDRPFSCHICGKTSTTKSNHNKHMRIHHARDPVSTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -