Nfla016155.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986043.1:71104346-71107254[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.6e-06 0.00017 22.4 0.9 1 23 244 267 244 267 0.96 2 12 0.14 5.1 8.3 0.4 3 23 285 306 283 306 0.90 3 12 0.011 0.42 11.7 0.3 1 23 332 355 332 355 0.93 4 12 0.0051 0.19 12.8 2.4 1 23 384 407 384 407 0.94 5 12 9e-05 0.0034 18.3 1.2 1 23 441 464 441 464 0.97 6 12 0.0064 0.24 12.5 0.4 1 23 486 511 486 511 0.91 7 12 5.7e-05 0.0021 18.9 0.8 1 23 516 538 516 538 0.93 8 12 3.4e-05 0.0013 19.7 6.1 1 23 544 566 544 567 0.96 9 12 0.46 17 6.7 3.6 1 23 572 594 572 594 0.94 10 12 0.45 17 6.7 3.2 1 23 600 622 600 622 0.98 11 12 6.8e-05 0.0025 18.7 2.9 1 23 628 650 628 650 0.96 12 12 0.00047 0.017 16.1 2.1 1 23 656 681 656 682 0.96
Sequence Information
- Coding Sequence
- atgaattttattgagAAAAATGAAGTTGAAGATCCTGTAGAGGAAGAAGAGGATAATGTTAGAATTTTATACGATATTGACTTCACATTATGTAGACTGTGTCAGGAATATACTGGAACTATTGAATTCTTAATGAATAAAACGTTATGTGAACAAATACGAACGTTTACTAATATTCACATTGAAAATAATGGTGAAAATTTCCCAAAATCAGTCTGTGAAAACTGCATagaacttttaaataatttccataTTTTCCAAGAAACTTGTAGACAAGTGAATGAACAATTAACGCATTTACTAATACAACATTCGAAAGGTGTGCAAAAATCGGTTCATTTTAATGGATCCGTAGAAACAGAAATTTACACCGATAAAGAACCAATtcatgaacaaaaatatataattctaaaatttgAAGAATCACAAACAGACGAAGATACACAACCACAACAAATCGAAACCGAACAAATTCGATTCAGCGAAGAAACTGTGAATAATGATGATGAGGAGATCTCATCGCCAACGGTCAATGTATATTATCACACCGAAGAAAATGTTATTTACGATGAAAATGATTTGAATTATGAGGTCGAACATTTGGATTATTCAGATTTAGAAAATTCTAAAAGTGATGTTGAAGGTAGTGAGGAATTAGTGAATTTAAAAAGTGacattgaaaaatatgaaaGTGATGGTGGCGGGGAAATTCGTAAAGATATTCGTCATTACATTTGTCCCgagtgtaataaattttatacacaaaaacgTTCACTAAAACGTCACGTTTTAAGTGCACATCCTGACCAGCCGGATGTCTGGCGACATGTAAAAGCGTTTAAGTCGTGTATTTGTATCGAATGTCGAATACCGTTTCGAGATAAAATCGAATTAAAAACACACGTGTTGAGTGAACATCCGGACAAACCACATATATGGCAGCTGTCGGACGAACGGGACGGCGACCAGTATAAGAAACAGCCGGGGCACAGTTACGCGTGCAACGAGTGTGGCAATATGTATACGGAGATTCGATCACTTAAGCGGCATGTCGTTAGCAAACATCCAGACAAACCAGACATTTGGAAGCAAGCTAAAGATCCATTTACGGTGAAACGATTCTGGCGTCAAAGTGATCCAGAACATTGTTTCCGTTGCAACGAGTGTGGCaacaaatattcatattttcgaTCATTACGACGACatgcatttaaaatacatgGCATGAAAATTTCagCATCAGAGagtgaaaatttgaaaattttgaataataaaatggaaaatcCATCATCGGAAAACAATACATTCGAAAGAAAACTGTACGATTGTAAATTGTGTGGAAAAATGGTCACGGAAAAACGTTCTCTGAGACGGCATCTGCAGAAAATGCATCCGGGCACCGTTGGTGCGGACCTGGCAGACAGCTTGGTCGATGTTGGTCGAATCGGTCCCAAGTACCTGTGTAACGTTGACAATTGTGCGGCTGCTTTTTCGAACAAAGAAAACTTCCAACGGCACCAGTACAAGGAGCACGGCGTCAAAGCGTACTTATGTCCGAAGTGTGGCAAACGTTTTCGTGACATTAAAAACTTAGAATCGCATGAAACGTATCATTTGGATGTGATGCCGCACAAATGCCCAAAATGTGAGCTGCGTTTCCGGCATTCGGCCAATTTAAAAGTACACATTCGCAATCATCACGAGGGACATCGATTCTATTGTTCGAAGTGTGGAAGAGCGTTCCTATCGAATTGTACGCGGAAGCGGCACGAGCTGATACACGCTGGCATCAAGGAGTTTAAGTGCGACCAATGTCCTGGTGAATTCTATACAATTAAGGAGTTGAAATGTCATCAGCGCTATCATAATgATATTCGACCCCATTTTTGTGATATCTGTTACAAAACATTTGTAACCAAAACAGTGCTACGAGTTCACATGCGTTCGCATACGGGCGAGCGACCGTTCAAGTGTGACCTCAACGGTTGTAGCAAAAGTTTTGCTGAGAAAGCGAAACTATACCGACATCAAAGAAATATTCATCATGTGAATCCACGCACGGGCgaaacattttaa
- Protein Sequence
- MNFIEKNEVEDPVEEEEDNVRILYDIDFTLCRLCQEYTGTIEFLMNKTLCEQIRTFTNIHIENNGENFPKSVCENCIELLNNFHIFQETCRQVNEQLTHLLIQHSKGVQKSVHFNGSVETEIYTDKEPIHEQKYIILKFEESQTDEDTQPQQIETEQIRFSEETVNNDDEEISSPTVNVYYHTEENVIYDENDLNYEVEHLDYSDLENSKSDVEGSEELVNLKSDIEKYESDGGGEIRKDIRHYICPECNKFYTQKRSLKRHVLSAHPDQPDVWRHVKAFKSCICIECRIPFRDKIELKTHVLSEHPDKPHIWQLSDERDGDQYKKQPGHSYACNECGNMYTEIRSLKRHVVSKHPDKPDIWKQAKDPFTVKRFWRQSDPEHCFRCNECGNKYSYFRSLRRHAFKIHGMKISASESENLKILNNKMENPSSENNTFERKLYDCKLCGKMVTEKRSLRRHLQKMHPGTVGADLADSLVDVGRIGPKYLCNVDNCAAAFSNKENFQRHQYKEHGVKAYLCPKCGKRFRDIKNLESHETYHLDVMPHKCPKCELRFRHSANLKVHIRNHHEGHRFYCSKCGRAFLSNCTRKRHELIHAGIKEFKCDQCPGEFYTIKELKCHQRYHNDIRPHFCDICYKTFVTKTVLRVHMRSHTGERPFKCDLNGCSKSFAEKAKLYRHQRNIHHVNPRTGETF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -