Nfla022933.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986046.1:7578752-7582096[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.4e-05 0.00053 20.8 2.6 1 23 862 884 862 884 0.98 2 9 0.17 6.3 8.0 3.3 5 23 894 912 893 912 0.96 3 9 0.0013 0.05 14.6 2.6 1 23 918 940 918 940 0.98 4 9 2.2e-06 8.1e-05 23.4 2.0 2 23 947 968 946 968 0.97 5 9 0.00097 0.036 15.1 0.9 3 23 976 996 974 996 0.98 6 9 0.0095 0.35 12.0 6.0 1 23 1002 1024 1002 1024 0.99 7 9 4.9e-05 0.0018 19.1 0.3 1 23 1030 1053 1030 1053 0.96 8 9 2.2e-05 0.00082 20.2 0.7 1 23 1059 1081 1059 1081 0.95 9 9 2.4e-05 0.0009 20.1 0.1 1 23 1087 1109 1087 1109 0.97
Sequence Information
- Coding Sequence
- ATGAGTGATCTTCTAACTAACCTACTATTAACTAACGCCAATTTTGATGATTGGAAAACTCGAGTCAAAAATATGCTACTTTTAAGTGGTGTTGACGATGTCATCGAACAGGAAATCGATGAGAATACTAACGTACAAGTTCGAAAAATATTCGAAACTAAAGATGCCACAGCTATTGCGATAATTCGGCAATGTCTAAGTGCTTCACAATTATACATGGTAAGAAATGCCACCACATCGAAAATAATGATGGACTCTTTGGAAACAGTATTTGGATTGAATATAAATAGAGATCAACCATCTGGCTCTGGGTTCACACAAAGTTATCCACTATTAACCCAGATTAATTTCGACAATTGGAAGTACCGAGTAACACGATTACTAAATGATAATTATGTCGGAGATACCATCCAACACGACATAAATAAGATAGGTAATCCACAAGTtcgaattaattttcaaaacaaagatGAAAAAGCTAAATCGTTAATCCGCGAATGTCTTACTGATCCACAATTAGCTTTGGTAAGAGATGCACCATCAGCTAAAGTCAAATTGGAATCTTTGGAAAGAGTATTCGGAGGACATTTACCTGATAATcatatattaagaaaattacatttcaaaagtGAATTGTTATCATTAAAATGTGAGGAAAATGAAGATTTAAccaatttttttgtcaaatttgaTTCGATTATTAACCGATTGGAATGTGTTAGCGAGAAATTAAGTGAATCGGATAAAGTTTGTGAATTAATACTATCAATGCCTCAACTGTATAACACGGTTATATCATCAATTTTGGAGACACCCCATCCAGAACTAACACTTGAAAATTTAAAGAGGGAATTGGTAGAAGcgcaatttttggaaaaacaggCAATGCTTAATCATAAGGATTCCGATAGTGACGAAGACACATTCCTTCAAGACTTCGATAGAATTTTTCGAACGGAGATATGGAAAAACACAGCCAtgcaaaatattgaaattgcacGTCGTGAAAAAAAGGTCaagattcaaaataaaaaatcagaCGTACAAAATACTGAAATTGAACGTCATGAAAAggtcaaaattcaaaataataaatcagaCGAACAAAATACTGAAATTGAACGTCATGAAGAGGTCAATATTCCAGATAATAAATTAGACGAACAATTAAATACGGAAACTGAACGTCATGAAAAGGTCAAGATTCAAGATAAAAAAACAGACGTACAAAATACTGAAATTGAACGTCAAGAAGAGGTCAAGATTCCAGATTATAAATTAGACGTACAAAATACTGAAATTGAACGTCATGAAGAGGTCAAAATTCAAGATAAAAAATCAGATGTACAAAATACTGAAATTGAACGTCATGCAAAGGTCAAGATTCAAGATAAAAAATCAGATGTACAAAATACTGAAATTGAACGTTTTGAAAAGTTCAAGAACCGagttaaaaaattagaaaaacaaaatactgAAATTGAACGTCATGAAAAGTTCAAGATTCgagtaaaaaaattagaaaaacaaaatactgAAATTGGACGTCATGAAGAGGTCAAGATTCCAGATAATAAATTAGACGAACAATTAAATACTGAAATTGAACGTCATGAAGAAGTCAAGATtcaagataataaattatttgaatataatactGAAATTGAGCGTCATGAAGAGGTTAAGATtcaagataataaattatttgaatataatactGAAATTGAGCGTCATGAAGAGGTTAAGATtcaagataataaattatttgaatataatactGAAATAGAACGTCATGAAGAGATTAAGATtcaagataataaattatttgaatataatactGAAATTGAGCGTCATGAAGAGGTTAAGATtcaagataataaattatttgaatataatactGAAATAGAACGTCATGAAGAGGTTAAGATtcaagataataaattatttgaatataatactGAAATTGAACGTCATGAAGAGGTTAAGATTCAAGAtagtaaattatttgaatataatactGAAATAGAACGTCATGAAGAGGTTAAGATtcaagataataaattatttgaatataatactGAAATAGAACGTCATGAAGAGGTTAAGATtcaagataataaattatttgaatataatactGAAATTGAACGTCATGAAGAGGTTAAGATtcaagataataaattatttgaatataatactGAAATAGAACGTCATGAAGAGATTAAGATtcaagataataaattatttgaatataatactGAAATTGAGCGTCATGAAGAGGTTAAGATtcaagataataaattatttgaatataatactGAAATAGAACGTCATGAAGAGGTTAAGATtcaagataataaattatttgaatataatactGAAATTGAACGTCATGAAGAGGTTAAGATTCGAGATAAAAAAGACATTATGGTTGAGGATGAAATATTAGAAACAGAAAATACTGAAATTGAACAATCACCACCACCTGAAGAAGTCAAAATTAGGAATGAAATTGAACAATTACATAATGAAATTGAACAATTACAAAACGAAATTCAACAAGCTCAAGCCGAGCAACGAAGTTAcccatgtgatgtttgtaataaagtaTTTAGTAAACGTCGACATTTAAAATTACATGCAAAAACACACTGGGACGAAAAACCATTTTCCTATGATGTATGCTCTAAAAAATGTACACAGAAACACAATTTAGATATTCATAAACGATCACATACTCGTGAAAGACCATTCTCATGTGGAATTTGTCggaaaacatttacaaataaaaccaaaatggattctcataaacgaattcatcGTGGCGATAGGCCACTTTCATGTAATATTtgtaagaaaacattttcaaattctaGAAATTTAGTCAGACATAAACGAATACACTGGGGAGGAAAACCATTCTGGTGTAATTTCTGCGCGAAAATATTTTCCGATACGAGAAATTTAGTGAAACATAGACGCGTCCATACGGGAGAGAAACCATTCAAATGCGGTATTTGCTGTAAAACATTTCGACAGAAACAAACCTTAAGTCTGCATAAACGGACACACAGTGGTGAAAAACCATTTGCGTGTGATgtctgtgacaaaaaatttgctGCGCCGAGTAATTTACGAACTCATAAAATGAGAATGCACACCGGTGAGAAACCGTTTTTGTGTAATATTTGTACGAAAACATTTGCACAACGTATTGATTTAGTTCGACATCGTCGAATTCATGTAGGTGAAAAACCATATGCATGTAAGATTTGTGACGAACGATTTATCGCGCCAAGTAATCTGAGATCTCATCAATTGGTTCACATGAAAGAGAATACATGA
- Protein Sequence
- MSDLLTNLLLTNANFDDWKTRVKNMLLLSGVDDVIEQEIDENTNVQVRKIFETKDATAIAIIRQCLSASQLYMVRNATTSKIMMDSLETVFGLNINRDQPSGSGFTQSYPLLTQINFDNWKYRVTRLLNDNYVGDTIQHDINKIGNPQVRINFQNKDEKAKSLIRECLTDPQLALVRDAPSAKVKLESLERVFGGHLPDNHILRKLHFKSELLSLKCEENEDLTNFFVKFDSIINRLECVSEKLSESDKVCELILSMPQLYNTVISSILETPHPELTLENLKRELVEAQFLEKQAMLNHKDSDSDEDTFLQDFDRIFRTEIWKNTAMQNIEIARREKKVKIQNKKSDVQNTEIERHEKVKIQNNKSDEQNTEIERHEEVNIPDNKLDEQLNTETERHEKVKIQDKKTDVQNTEIERQEEVKIPDYKLDVQNTEIERHEEVKIQDKKSDVQNTEIERHAKVKIQDKKSDVQNTEIERFEKFKNRVKKLEKQNTEIERHEKFKIRVKKLEKQNTEIGRHEEVKIPDNKLDEQLNTEIERHEEVKIQDNKLFEYNTEIERHEEVKIQDNKLFEYNTEIERHEEVKIQDNKLFEYNTEIERHEEIKIQDNKLFEYNTEIERHEEVKIQDNKLFEYNTEIERHEEVKIQDNKLFEYNTEIERHEEVKIQDSKLFEYNTEIERHEEVKIQDNKLFEYNTEIERHEEVKIQDNKLFEYNTEIERHEEVKIQDNKLFEYNTEIERHEEIKIQDNKLFEYNTEIERHEEVKIQDNKLFEYNTEIERHEEVKIQDNKLFEYNTEIERHEEVKIRDKKDIMVEDEILETENTEIEQSPPPEEVKIRNEIEQLHNEIEQLQNEIQQAQAEQRSYPCDVCNKVFSKRRHLKLHAKTHWDEKPFSYDVCSKKCTQKHNLDIHKRSHTRERPFSCGICRKTFTNKTKMDSHKRIHRGDRPLSCNICKKTFSNSRNLVRHKRIHWGGKPFWCNFCAKIFSDTRNLVKHRRVHTGEKPFKCGICCKTFRQKQTLSLHKRTHSGEKPFACDVCDKKFAAPSNLRTHKMRMHTGEKPFLCNICTKTFAQRIDLVRHRRIHVGEKPYACKICDERFIAPSNLRSHQLVHMKENT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -