Nfla015738.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- Bcl11a
- Assembly
- GCA_963920215.1
- Location
- OY986043.1:55746859-55753079[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00019 0.0072 17.3 0.7 1 23 50 72 50 72 0.98 2 12 0.46 17 6.6 0.4 2 23 79 103 78 103 0.83 3 12 0.0015 0.055 14.5 0.9 1 23 109 134 109 134 0.97 4 12 4.6e-06 0.00017 22.4 0.5 1 23 140 162 140 162 0.97 5 12 0.00024 0.0088 17.0 5.2 3 23 170 190 169 190 0.98 6 12 0.0011 0.041 14.9 1.6 1 23 196 218 196 218 0.97 7 12 0.004 0.15 13.1 0.6 1 23 237 259 237 259 0.96 8 12 6.3 2.3e+02 3.1 1.8 3 19 267 283 265 285 0.91 9 12 3.1e-05 0.0012 19.8 0.8 2 23 406 427 406 427 0.97 10 12 0.029 1.1 10.4 0.3 3 23 434 454 432 454 0.96 11 12 0.00015 0.0055 17.6 0.2 2 23 461 484 460 484 0.94 12 12 0.0043 0.16 13.0 8.2 1 23 490 512 490 512 0.99
Sequence Information
- Coding Sequence
- ATGGAAactgaacaaatattaaattttgatgatCGTTTAAagatTTTTAACGATTTATTACCTGAGAAATCTGATTCTATACCAAAAAGacgtattttcacaaaaatcaTAAAGTTCAAAAATAACACAGAGGCGGACTTTAACAATTATACTTGTGATTTGTGTGGTAAAAGTTTTGAACGTGAAATACAATATTATGGACACTTACAAAAACATAGCGGAGAAAGAAATTGGAAATGTGaaaaatgtttggaaaatattacatttagaaCTGAATCTCAGTTGAGAGAACATGAAATACAATTTCATTTTCAGAAAAGAGATTATAAATGTTCCCAAGAAGGGTGCGATAAAAGTTATAATCGACCCTCACGTTTAGATTATCATAATCGACGTGTTCACCTAAACGAAcgaaattttgattgtaaaattTGTGATAAAGGATTCTTTACTAGTACTGACCTAAAGGCCCATTTAAATATTCATCTAGGAACAAACAAGAAGATATGCGAAAAGTGTGGACAATCATTTCAtcatatgtcaaattttttacgTCATATTCGAAAACATGATGGTATCAAACCATATCAATGTGAAAAGTGTGATAAGCGATTTAGTGAAATAACAATTTTGAAGAAGCATATGTTATTTCACGATAAATCGCATAAGGATACAAAAGTAGACTCAAACAATGGCAATGATaggaaattttattgttatgtgtgtggaaaaacttttcaatatttACAAGATGTTCGACAACATGAAATTATTCATGAAAAAGATCAAAATATATTCTGTAGATCTTGTTTAAAAtcattttcaacaataaaagaaatgaaattaCATAATTGTTTTCTTGCAAATAATAACAGTAAGAATAACGAAAACAATAACGATAATGAAGGAAATTCATCATTTAATTTAACAAGTGATTGGACACAGATTATGAATGGATTGTTATCACAATTAGATATTGATTTGGAAAATAAAGGTCAAACTgtattatcgaataattttgaAGACGACGGATTAATTTTGAGTCAATCAAAATCAATTAACAATACCACGGATTCAACacagatcaattttaataatcaaataaatgaattatcacATTATCAAATAGACAGAACAGAATTAGAGATTCAGACAGAACAAAataatcaattgaaaaatttagtTGATATAAAAGACGattttcttaaacaaaatgtttgtaaaatttgtgGAGCAGTTTTTGCTCACAACTCTTCAATGTATCGCCATTTACGCAATCATTCAACAAATTTAGTAAACTGTGATTATTGTGATAAGAAATTATCAGTCGATTCACTTTATACACATATACGACGTGTGcataaacaagaaaaaaacattgtttgcTCTTATATGAATTGTGGGAAGGTGTTTTTCAAACAAGCGGATTTAGTAATACATCAAcggAGTCATACAAATGAAAGACCTTTTAAATGCAGACATTGTTTCAAGTCTTTTATAAGCTCATCACATCAATTAAGACATGAAAAAACTCATAAAAAGAagacatcataa
- Protein Sequence
- METEQILNFDDRLKIFNDLLPEKSDSIPKRRIFTKIIKFKNNTEADFNNYTCDLCGKSFEREIQYYGHLQKHSGERNWKCEKCLENITFRTESQLREHEIQFHFQKRDYKCSQEGCDKSYNRPSRLDYHNRRVHLNERNFDCKICDKGFFTSTDLKAHLNIHLGTNKKICEKCGQSFHHMSNFLRHIRKHDGIKPYQCEKCDKRFSEITILKKHMLFHDKSHKDTKVDSNNGNDRKFYCYVCGKTFQYLQDVRQHEIIHEKDQNIFCRSCLKSFSTIKEMKLHNCFLANNNSKNNENNNDNEGNSSFNLTSDWTQIMNGLLSQLDIDLENKGQTVLSNNFEDDGLILSQSKSINNTTDSTQINFNNQINELSHYQIDRTELEIQTEQNNQLKNLVDIKDDFLKQNVCKICGAVFAHNSSMYRHLRNHSTNLVNCDYCDKKLSVDSLYTHIRRVHKQEKNIVCSYMNCGKVFFKQADLVIHQRSHTNERPFKCRHCFKSFISSSHQLRHEKTHKKKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333239;
- 90% Identity
- -
- 80% Identity
- -