Nfla010275.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986042.1:23360435-23362018[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.5 1.3e+02 3.9 0.0 2 23 190 211 189 211 0.93 2 11 0.00024 0.0088 17.0 0.4 2 23 238 259 237 259 0.95 3 11 2.5e-05 0.00092 20.1 2.6 1 23 264 286 264 286 0.98 4 11 0.003 0.11 13.5 0.2 2 23 293 314 292 314 0.97 5 11 0.0033 0.12 13.4 1.1 1 23 320 342 320 342 0.96 6 11 0.00015 0.0057 17.6 0.4 1 23 348 371 348 371 0.97 7 11 0.018 0.66 11.1 2.8 2 23 383 404 383 404 0.96 8 11 0.0037 0.14 13.3 2.2 3 23 412 432 411 432 0.98 9 11 2e-05 0.00074 20.4 2.1 1 23 438 460 438 460 0.99 10 11 9.5e-07 3.5e-05 24.5 1.5 1 23 466 488 466 488 0.98 11 11 0.024 0.91 10.7 0.3 1 21 494 514 494 515 0.93
Sequence Information
- Coding Sequence
- ATGTACGGACACTTCAAGAATATACCTATTAAACAGGATCCTGGTGACTTTGAACCTATTGTAACTATTCTAGAATTGCCAGTAAAGAAGAAACTCGAAAATgtgataaacaaattaaaaaatcattcagaatcagatgacgatgatgatgatttaacattagccaaattaaaattaacgtCACAAGGCGGTAAATCTCGGAAAAATTCAGcctcaaatacaaaaacaaaatcaagTCGGAAAAAAAATACTCCAAAAAAAGTGAAtgtcaaaaaattcaattctgAAGTTGAAGATAGTGACGAGGATGAAGAGTATGTACCACcggcaaaaactaaaaaatccaaaagtaaaacgaaaaaagataaagaTAAGGATAAAAATAAGGATAGTATGTTGTTAGATGATGTAAAAATCAAAGAAGAATTCGATGATGATGAAGATGGTGGTTATCAAAATCCATTTAATTATGGATACGATTTGTTACCATCATCTGGTAAAAAACGTAAACCATTTAATAAGAGTACAAAATCAACATCCTCAGCAAAGGCAACTAAATCAAAATGGTCTTGTTTAATATGTTTAGCTGATTTAGCATCCAAAGATGCATTAATTTCTCATTATGCCATACATAAAAATGATCCAATTAAAGAGGAAGATATTACATTGGATAGTAATAGACCACCTTCAATGTTACTTGATAACGTATTACAATGTCAAATATGTGGACAAGTATTTGAAACTGacaaagaattgaaaaaacatTCTGAAAGTCATGTGGATGAACATTTTCATTGTGAAATATGTGATACAAGTTTTAAGCGTGCATACGATTTCTCAGCACACTCACGTACACATACCGGTGAACCAGCATTAAAATGTGATTTATGTGATTATGAAACAGTGTATCAGAATGCATTGAAAGTGCATTTACAAAGACACTCCGCAGACTATAAATACAAGTGTGAAATATGTAATAAAGGTTTCTTTATACAGAGTTGGTATGAAGAGCATAAAAACTTTCATACAGGTGCTAAACCATTTGTGTGTGATATATGTGAAAAACCATTTGCATATACACGCTATTTGACAGCACATAAACGTAATTTACACCCCGAAAGTTATCGTGATGAACCAATTGTCAATGAATGTGTCATATGTTGTAAACGATTTGCACATGCAAAAAGTCTTATGTTGCATATGCGTGGACATACTGGTGAAAATACCGTCTTATGTGATATATGTGGTAAACGTTTATCAAGTAATGAACATTTAAAATTCCATCGTCGGATACATACCGGCTACAAACCGTATACTTGTGATGTATGTAGCAAAGGTTTTgcgaaaaaatgtaatttaacgtTACATTTACGTGTGCATAGCGGTGAAAAACCATAtgtatgtgatgtttgtggtaaATGTTTTTCACAACGTTCAACCCTCGTTATACATGAGCGGTATCATACTGGACAACGGCcatatatttgtcatttatgTCATAAAGGATTTGTTGCAAAAGGTGTTCTTAGTATTCATTTAAAGAGTTGTAGTCGAAACACTATCATGAGCAATATTATAGAATAG
- Protein Sequence
- MYGHFKNIPIKQDPGDFEPIVTILELPVKKKLENVINKLKNHSESDDDDDDLTLAKLKLTSQGGKSRKNSASNTKTKSSRKKNTPKKVNVKKFNSEVEDSDEDEEYVPPAKTKKSKSKTKKDKDKDKNKDSMLLDDVKIKEEFDDDEDGGYQNPFNYGYDLLPSSGKKRKPFNKSTKSTSSAKATKSKWSCLICLADLASKDALISHYAIHKNDPIKEEDITLDSNRPPSMLLDNVLQCQICGQVFETDKELKKHSESHVDEHFHCEICDTSFKRAYDFSAHSRTHTGEPALKCDLCDYETVYQNALKVHLQRHSADYKYKCEICNKGFFIQSWYEEHKNFHTGAKPFVCDICEKPFAYTRYLTAHKRNLHPESYRDEPIVNECVICCKRFAHAKSLMLHMRGHTGENTVLCDICGKRLSSNEHLKFHRRIHTGYKPYTCDVCSKGFAKKCNLTLHLRVHSGEKPYVCDVCGKCFSQRSTLVIHERYHTGQRPYICHLCHKGFVAKGVLSIHLKSCSRNTIMSNIIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333223;
- 90% Identity
- iTF_00333223;
- 80% Identity
- -