Nfla016871.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- cpnA
- Assembly
- GCA_963920215.1
- Location
- OY986043.1:93605700-93631186[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00082 0.031 15.3 1.6 1 21 571 591 571 592 0.97 2 16 7.2e-06 0.00027 21.8 3.0 3 23 600 620 598 620 0.96 3 16 0.00056 0.021 15.8 1.6 1 23 626 649 626 649 0.98 4 16 0.00082 0.031 15.3 0.2 3 23 657 678 655 678 0.95 5 16 0.00021 0.0078 17.2 0.9 1 23 687 709 687 709 0.97 6 16 0.0008 0.03 15.3 0.4 1 17 715 731 715 732 0.95 7 16 0.0058 0.22 12.6 0.9 2 23 808 830 807 830 0.91 8 16 0.88 33 5.8 1.0 2 20 839 857 838 859 0.92 9 16 1.7 65 4.8 2.4 2 23 869 891 868 891 0.92 10 16 0.086 3.2 8.9 0.8 1 23 899 921 899 921 0.96 11 16 0.34 13 7.0 1.1 1 23 921 944 921 944 0.90 12 16 0.00052 0.019 15.9 4.4 1 23 952 974 952 974 0.97 13 16 4.5e-05 0.0017 19.3 0.6 1 23 981 1003 981 1003 0.96 14 16 0.0062 0.23 12.5 2.3 1 23 1009 1032 1009 1032 0.98 15 16 0.004 0.15 13.1 0.4 1 23 1038 1061 1038 1061 0.94 16 16 0.46 17 6.6 1.3 1 13 1071 1083 1071 1084 0.88
Sequence Information
- Coding Sequence
- ATGGGTCTTGAAGAAAATTTATCCTTGATATCCAAGCGAAatcAACCACGTTATGAAAATACATATCGTTTAGAATCTAAACAACCATTTCTACATGAACCAGTTGAGCAAATTATAAGGACTGCTATCGATTCAAAATTTAATCGACAATCGCGTTACAATGCAAGCGAATCCCCACAAATGGTTATTAAATTATCGAAAGATATTCGTACAAAAGTTCAAGCATTGAACTTCGAaagataTCGTTTAATTTGTTTAGTATCAATTTGCGAAAATCATGGACAATCTGGTTTAGGTCTAATGAAATGTTTATGGGATCCCGAACGTGACTCATTTGCCTGTTACAAATTTGAGAGtgaatatttattagtttatgGTGTTATAACAGGTTCTGGTAATGGTTTAGGACGTCAATTATGCTTCGAATTTGCTCAAAAACAATGTCAAATAGTATGTGTCGATATAAATGAACCAAATAATACCGAAACTGTTCAATTGGTCAAAGCACAGTATCctaaatgtaatataaaatcATTCATTTGTGATGTCTCAAAATATAATGAAGTACAAAAAGTGATACaacaaattttgattgaatACAAATGTGTGGATATTTTAATCAACAATGCTGGCATTATTTATTGTAGAGAATTAGAAGAATATACTGAaatgcaaatacaaaatattatgaatattaatgtGTTATCTCATTTTtggACtacaaaagaaattttaccAGCGATGAAAGAACGGGATTCTGGATGTATTGTAGCGATATCATCGTTGGGAGGAATAATTGGTGTTAAGCATATAAATCCATATTGTACATCAAAGTTTGCTATTACAGGTTTTATGGAAtccttaaaaaatgaattacgcTTCAGCAAATCAAATGTTCGAACTTTATCCGTACATCCAAACTTTATGGGTACACAAATGGTGAAGAAAAAAATGCACAATATTGTTCAAAATCCATCGGATGTTGCGCATAAGATAATTGTAGGTATTGAAAACGGTGATACACGAATATTTATACCGTTTTATGTATGGCATTTAGAAAAATTAGGACGACTATTTCCATTTATTTGTGATTATATTtccaaaaatgataatttaccaaaaaatatttGCGATACATGCTACAATAAAGCAACAAATGCATATGCATTTTATTGCCAATGTGAACGATCTGAAGAGATTTTAAAACGTACATTCTCCGATAAATCCGAATTTAGTGTAGTATTTACATCCAACGATCATATAAATCgatcattttcaaataattacaattgtttATATCCAAATCAATGTGAAAGTGAATTCGAATGTGttgattcaataaaaacaaTCAACTTATCGGAGGACAGTAATCATAGCTTAAATACAAATCATTCGGATTATAATTTATCGAATAAAATTGATGAGACACAAGTACAATATAATACTGCCTGTTTTGTGGAGTCATCATGTAAATGGAATACAGAGTTTGATAATCAACGATTAAATACATTAGTTCCATATTCGGCTCATGTTCAACCTCAAGATACCATTGAGAATATGCCCACGCAAGCGCATACGCATTTGGAAGAAGAACAAAATGAGAATAGTAGTACTTCGTTAGTGGATTTATTATCAGTAGGAAGTTGTCCTGAAGAAGAGTCTGTTAAGATACCTCGTCTAGAGCCAGAAGATGATTTAGatgaagatatttttaaatgtaaaaactgtGAtcaaaaattcaatacaaaatggCGATTATTACTCCATATgcgaaattgtaaaaatgatgtACATCTATGCCAAACGTGTGGAAAGAAATTTgcatttcaatcaaatttaaaacgacATGTTCGAATACACAGTGGGGATAAGCCGTATATATGTCCATATTGTCCTCATAAacGTTTTGCTCAATCCAATCAATTAAAATCACATTTATTAACTCACTCAAAATCAAAGGAACATCTATGCAACATTTGTGGTATTGGTTACGCACGTGTGGATGCCTTAAATGTCCACATTCGTCGAAAACATTCAACAACCGCCCCAAAACGTATATATTCGTGTAGCATTTGTAGTAAGAGCTTTAaagATATTCGAGATTTATCACAGCATAAATTAATACATCGTAATGCTGGAAATTATGTTTGTGATACGTGCGGTAAAGCTTTCAAtcgtaaaactaatttaaagTTATCTgaaaaaactgataaaattttacgtaaaaaTGATAACGAATTACAAGAAATCAAAAATCAATTGCTAGATATTGAAACAAATGTTGAAATTGATAATGTATCAATTAAATCAGAAACACAAGATGAAAAAACCATTAACTATGAAGAGAATTATGATTCAGATTTGGATACATTTAATAATGATTCGTACGAAGATCAACCAATTgaacaaaaaccatttttaaagtGTAAATATtgtgatttaaaatttacaaatctagaTGATCGAAAAATTCATCAGGTCAATGAGCATACCCATCAAAAAGATCCATTTTTAAAGTGTCGATAttgtcatttaaaattttttacgttAGAGGATCGTAAAGCACATTATGCGGAACTTACCAATGCACAACGGGAATCATTAAAATGTTCGTATTGTTTGATGTCATTCTGTAAGGAGGATGATAAAAGTACACATCAAGCACAGGAGCATGGTAATGAGGaggataaaaaatttatatgtaatgcATGTGGGAAGGAGCATCCGACACGCAAACAATTGATTCGACATCAATATAATCATAAATGTGTTTACTGTCCGATGTCGTTTTGTATGGAACGAGATCGAATTGCACATCAAGATGCTGCACATAGCAATGAGGAggataagaaatttaaatgCACTACATGCGGTAAAGAGTACCCGACGCGTAGACAGTTAAGTAGACATCAATATCATCATAGACAACCAAAAGGTGATTATTTATGCCCGACATGTGGGAAAAAATTCCAAACACAATTATATCTGAATGTACATATACGTCTTCATACTGGAAAATTACCATATAAATGTCCACATTGTCCAAATAGaAGCTTTAATGAACGTAGTCAAATGAAATCTCATTTAGTTACAcacaccggagaaaaaccatttttatgtaatatttgtgGGCTAAGTTATGGAAGAGCGCGAGCATTAACTCTTCATAAACAACGGAAACATCCTGAACCAAATGCAATACAAAAAAGTTACGAATGTGATATTTGTCATAAAGAATTTAAAGGTAAATATGTCATATGA
- Protein Sequence
- MGLEENLSLISKRNQPRYENTYRLESKQPFLHEPVEQIIRTAIDSKFNRQSRYNASESPQMVIKLSKDIRTKVQALNFERYRLICLVSICENHGQSGLGLMKCLWDPERDSFACYKFESEYLLVYGVITGSGNGLGRQLCFEFAQKQCQIVCVDINEPNNTETVQLVKAQYPKCNIKSFICDVSKYNEVQKVIQQILIEYKCVDILINNAGIIYCRELEEYTEMQIQNIMNINVLSHFWTTKEILPAMKERDSGCIVAISSLGGIIGVKHINPYCTSKFAITGFMESLKNELRFSKSNVRTLSVHPNFMGTQMVKKKMHNIVQNPSDVAHKIIVGIENGDTRIFIPFYVWHLEKLGRLFPFICDYISKNDNLPKNICDTCYNKATNAYAFYCQCERSEEILKRTFSDKSEFSVVFTSNDHINRSFSNNYNCLYPNQCESEFECVDSIKTINLSEDSNHSLNTNHSDYNLSNKIDETQVQYNTACFVESSCKWNTEFDNQRLNTLVPYSAHVQPQDTIENMPTQAHTHLEEEQNENSSTSLVDLLSVGSCPEEESVKIPRLEPEDDLDEDIFKCKNCDQKFNTKWRLLLHMRNCKNDVHLCQTCGKKFAFQSNLKRHVRIHSGDKPYICPYCPHKRFAQSNQLKSHLLTHSKSKEHLCNICGIGYARVDALNVHIRRKHSTTAPKRIYSCSICSKSFKDIRDLSQHKLIHRNAGNYVCDTCGKAFNRKTNLKLSEKTDKILRKNDNELQEIKNQLLDIETNVEIDNVSIKSETQDEKTINYEENYDSDLDTFNNDSYEDQPIEQKPFLKCKYCDLKFTNLDDRKIHQVNEHTHQKDPFLKCRYCHLKFFTLEDRKAHYAELTNAQRESLKCSYCLMSFCKEDDKSTHQAQEHGNEEDKKFICNACGKEHPTRKQLIRHQYNHKCVYCPMSFCMERDRIAHQDAAHSNEEDKKFKCTTCGKEYPTRRQLSRHQYHHRQPKGDYLCPTCGKKFQTQLYLNVHIRLHTGKLPYKCPHCPNRSFNERSQMKSHLVTHTGEKPFLCNICGLSYGRARALTLHKQRKHPEPNAIQKSYECDICHKEFKGKYVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -