Nfla021297.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- ZFY
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:27707872-27710353[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.014 0.52 11.4 1.3 3 23 155 175 154 175 0.95 2 20 0.00065 0.024 15.6 2.9 2 23 186 207 185 207 0.97 3 20 0.00037 0.014 16.4 0.4 2 23 224 245 223 245 0.96 4 20 0.52 19 6.5 1.0 1 23 252 274 252 274 0.96 5 20 0.015 0.54 11.4 0.8 2 23 280 301 279 301 0.97 6 20 0.51 19 6.5 2.0 1 20 309 328 309 331 0.89 7 20 0.014 0.51 11.4 0.6 2 19 397 414 396 416 0.95 8 20 0.086 3.2 8.9 2.1 3 23 425 446 423 446 0.94 9 20 0.031 1.2 10.3 0.5 2 23 457 478 456 478 0.96 10 20 0.00037 0.014 16.4 0.4 2 23 495 516 494 516 0.96 11 20 0.3 11 7.2 0.8 1 23 523 545 523 545 0.96 12 20 0.068 2.5 9.3 1.0 2 23 551 572 550 572 0.97 13 20 0.00093 0.035 15.1 3.9 1 23 580 602 580 602 0.98 14 20 0.0011 0.039 14.9 3.4 1 23 607 629 607 629 0.96 15 20 0.67 25 6.1 1.1 3 23 641 660 640 660 0.83 16 20 5e-05 0.0019 19.1 2.4 1 23 666 688 666 688 0.98 17 20 3.7e-06 0.00014 22.7 3.2 1 23 694 716 694 716 0.98 18 20 1.4 51 5.2 4.9 1 23 722 746 722 746 0.95 19 20 0.96 36 5.6 1.4 1 23 753 774 753 774 0.94 20 20 0.00011 0.0042 18.0 3.6 1 23 780 803 780 803 0.96
Sequence Information
- Coding Sequence
- atGGAAACAGAACTTAATTCAATTcatgatttacaaaaattatgtcGATTATGTATGGAAATAGGATGCGAATTGTATTCTATTTACGATATAACTCCTGTAGATGAAATGGGACTGTATATTCAGCTTTTAGAGATGATAATGGAATGTACTTCGCTAAATATTGATATCGGCGATGGGTTACCAGAATCGATATGcatggaatgttttaattatttgagtACTTCATATAACTTTAAACTACTTTGTGAGAGAtctgataaaaaattaaaagaatgtGTTGTCTTACTTAAGGAAGCTACAAAAAAAGATTCTGAGCTTGATAATAAGGATGATATTCAGATTGAAATGAATGAAGAAACTGTTGATAAAAAAGTGATAACAGAAAAGAATCAGAAAAACGCCAACGTTGaattaacaaataacaaaacaaatataaaatatacatttaaaacaaacaactgtgGTATTTGTTTTAAGAATTTTCCAAATACAACACTACTCAAGGCACATTTACATGAACATTCGATCGAAATGAACGGTGGGAAAATTCAACGGTGTAATATATGTGATGCAATATTTTCTAATCAAAATAAACTATGTTCTCATTATCGCCAACATATTGACATGGCGACATACTATTGTAATGAAATTGACGATAATTCATTAATTTGTTACTATTGCAATGTACATTTTACAAGAGTCGCCGATTTagaaaaacatattaatgttcATACAGTTACTCAGAGTATATTTGCATGCCAgttatgtaattataaaaatactgacAGTGATTCCATTAAAAAACATTTGAGCAGCCACGGAATTAATCCACTTGTTTGTAATTTATGTCTATTGACTTTTATATCAGGTTCTAAATTTCGTAAACACGTAAAGACACATAAACCTATCAACAGATTAAGTTATTCTTGTGACatatgtaaagaaaaatttttaacacgaCACGAAATTCGACATCATATCCCAGTTCATGTAAATGATTTACTACATGCGCGTAGTAAATCATTTGCATTAACTACAAATGAAGCTGAAGAAGCAATGAAAGATTCTGGCCTAGATAATTGGGATGATATTCAGATTGAAATAAATGGAGAAACTGTTGGAGaaaaagttataacaaaaaagaataaaaaaaagacCAACGTTGAATTAACAAATACTTATGTAGAATGtacattttgtttcaaaaaatttagtAGTGAGGCAAATTTAACGTTACACTCATATGCATGCCAAATTAAAACAACCAACTGTGGTATTTGTtgtaagaatttttcaaatacaaccCTACTCAAGGCACATTTAAATTATGAACATTCAATCGAAATAAATAATGGGGAAATTCAAACGTGTGATATATGTGACGCAATAttttctgatcaaaataaactattttttcatTATAGACTACATGTTGACATGGCGACATATTATAGTAATGAAATTAACGATAACTCATTAATTTGTTACTATTGCAATGTACATTTTACAAGAGTCGCCGATTTagaaaaacatattaatgttcATATAGTTACTCAGAGTATATTTGCATGTCAGTTATGTGATTATAAGAATACTGACAGTGATtccattaaaaaacatttaagtaGCCACGGAATTAATCCACTTGTTTGTAATTTATGTCTATTGACTTTTATATCAGGTCGTAAATTTCGTAAACACGTAAAGACACATAAACCTATCAACAAATTAAGTTATTCTTGTGACatatgtaaagaaaaattttcaacacGACACGAAATTCGACATCATATCACAGTCCATGTAAAAGATTTACACACATGCAAAACGTGTTCAAAGTCGTTCATAAATCTTGACAATTATGAATCTCATAAAAATGAACATATTCAACAAGGTAAGCAAAGCAGGTCAGTGTTATGCTCAACatgtggaaaattttttgttgatagtTTTTTAAGTTATCACATGATGTTTCATGATGATATTAGACCATTTTCATGTACAATATGCGAAAAACGTTGTCGTACTAAAGCAGCTTTAAAAAATCATCAATTAGTACATAGTGACATTAGACCTCACACTTGTACATTTTGTGGATTTTCATTTAAACGGTCTAGTGATTTGACTGAGCATCTTCGTATTCATACCAATGAACGACCATTCAGTTGTACATTTCATGATTGTAAtgctaaatttaaaacatcCCATGCTATGCGTTTTCATATAAGGGCGCATACAGGTTCAAACAAAGTTTATACATGCAAAGTATGTAATAAAGACATTCTAAAGAAATCAATCAAACGACATATGTTTATACATACGAATCAGAGACCCCAtaaatgtgatgtttgtgataaaagatttaaaCGTATTGATCATTTAAATCTTCATAGAGCTAAAATTCATTCTCAATTAACATAA
- Protein Sequence
- METELNSIHDLQKLCRLCMEIGCELYSIYDITPVDEMGLYIQLLEMIMECTSLNIDIGDGLPESICMECFNYLSTSYNFKLLCERSDKKLKECVVLLKEATKKDSELDNKDDIQIEMNEETVDKKVITEKNQKNANVELTNNKTNIKYTFKTNNCGICFKNFPNTTLLKAHLHEHSIEMNGGKIQRCNICDAIFSNQNKLCSHYRQHIDMATYYCNEIDDNSLICYYCNVHFTRVADLEKHINVHTVTQSIFACQLCNYKNTDSDSIKKHLSSHGINPLVCNLCLLTFISGSKFRKHVKTHKPINRLSYSCDICKEKFLTRHEIRHHIPVHVNDLLHARSKSFALTTNEAEEAMKDSGLDNWDDIQIEINGETVGEKVITKKNKKKTNVELTNTYVECTFCFKKFSSEANLTLHSYACQIKTTNCGICCKNFSNTTLLKAHLNYEHSIEINNGEIQTCDICDAIFSDQNKLFFHYRLHVDMATYYSNEINDNSLICYYCNVHFTRVADLEKHINVHIVTQSIFACQLCDYKNTDSDSIKKHLSSHGINPLVCNLCLLTFISGRKFRKHVKTHKPINKLSYSCDICKEKFSTRHEIRHHITVHVKDLHTCKTCSKSFINLDNYESHKNEHIQQGKQSRSVLCSTCGKFFVDSFLSYHMMFHDDIRPFSCTICEKRCRTKAALKNHQLVHSDIRPHTCTFCGFSFKRSSDLTEHLRIHTNERPFSCTFHDCNAKFKTSHAMRFHIRAHTGSNKVYTCKVCNKDILKKSIKRHMFIHTNQRPHKCDVCDKRFKRIDHLNLHRAKIHSQLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -