Nfla017893.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986044.1:13041991-13049061[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 0.46 11.6 2.4 1 23 98 120 98 120 0.97 2 12 0.00013 0.0047 17.9 2.6 1 23 126 148 126 148 0.98 3 12 0.026 0.98 10.5 1.0 1 20 154 173 154 175 0.92 4 12 2.4e-05 0.00088 20.1 0.1 3 23 184 204 183 204 0.97 5 12 6.1e-05 0.0023 18.9 0.2 2 23 359 380 358 380 0.96 6 12 2.9e-06 0.00011 23.0 6.9 1 23 389 412 389 412 0.97 7 12 2.6e-05 0.00097 20.0 3.5 1 23 418 440 418 440 0.98 8 12 0.00011 0.004 18.1 1.7 1 23 447 470 447 470 0.92 9 12 0.011 0.41 11.7 2.7 1 23 482 504 482 504 0.95 10 12 0.0088 0.33 12.1 0.9 1 21 511 531 511 532 0.95 11 12 9.3e-06 0.00035 21.4 1.0 1 23 540 562 540 562 0.96 12 12 0.0085 0.32 12.1 3.8 1 21 568 588 568 590 0.94
Sequence Information
- Coding Sequence
- ATGAACTCTGTAACAGATGGAGACGGTCTACCAACATTTATATGTTCCATCTGTatcagtaaattaataaatgcgTACACATTCAAACAACAATGTGAATTAATTGATTCAAGTTTtcgattattaattaaaaagaatgaAATCAAACAAGAAATAACATCAACTGATGATTTAGATTACAATGAGTACTCAGCAGCACGTGACACCACCGAAATCAAAACAGAAGAAGATATTCCAAAAGTTGAAAATGATACAAtaccaaataataaaacatcatcATCAACGACAACACATTCATGTCAAATATGTGCAAAAGTGTATGCATGTGAAGCGAATCTAAGTCGACATATGCGTCAACACTTCCCGAGTAAACGATTTCgttgtaaaatatgtaataGTACACTGACACGTATGGATCATTTGAAACGACACATGATTatacatttgaaaacaaaaccaCACGTATGCCGTACGTGTAAACGTGGTTTCAATAAAGCTGATAATTTATATTCGCATGAGAGTCGATGTATTGGTCAACGACCCAATATATGTCCAATATGTAATCGTGGTTTTATGCGGGCCGATAGTTTACAAGTTCATATGAGCTCACATGAACCATCCGCAGAATGTTCATTAGTTTTAGACTCATTAGAcaatattgataaatatattgaaattcaaGATTGTTTCGGTCCAGATGAAGAATCAACAACACAATCAGAACATGATCAAAATAGTCAGGAACATAATTTATTAGAACCACAAGTTAATATATTAGAGGGAAATAACTGTAATCAAAATAATAGTATTCCAGATCATTCGTCAGGTTCCAGTGACGACGGAGGTGacgataattatttattatccacATTTACTCAAGATcacaataatgatgatgatgatgatgaagataatgatgatgatgatgattcaaAACCATTAAAACCACGTAACACCAACAATCAAAACAACAGTAACAGTGGTGATACTCGACATAATGAACAACAAAATAATGATCttataaacacatacacaacattAGAGGATAAAACAAAACATGGGACATTAGATTTACCATGTGACCAATGTGACAAACGTTTTGCATCCCTTGTAAATCTTGAAGTACATAAACAACGACACAAtcgtaaagaaaataaaaatgtattccaTTGTACgcaatgtgataaaaaatttacacgtGCTGATCATCTAAAACGTCATATGAATAGTCGTCATGAGAATTATAAACCATTTAAATGTCGTATATGTGCGAAAACATTTACACGGCGTGACCATATGGTACGTCATTTAAAAGTACATGAAATTGATCCTCGTACTTTCACATGTGACGattgtcaaaaacattttacacGTGAGGAGCTATTAGTCAAACATCGTGCTGCTAAACATGGCGTTGGCGAGAAAATGATacctgataaaaaatttaagtgtcatatttgtgataaattatttacaacggAAAAGTATCGTGATACACACATCTCTGCACATGGCAATAAAACTAAAGTATTCCGATGCAAAGGGTGTGATCAAGAATTTGAATGTAAAGATGATTTagcaaaacatttaaaagtgGCTAATGATTGTTCAAGACGATTTTTATGTTCCGAATGTGGACAACGCTTTACTAAACGTGATTATTTATTGGTACATATTCGACGACATCGTGGGGAAAAGCCATTCAAATGTCGATTTTGTGATAAAGGATTTCCTAGGACTACCGATTTAAAAGCCCATGAAAAATGTCATACCggtgaaaaaaatcatttatgcaTTGTTTGTGGGAAAGGATTTGGGaggtaa
- Protein Sequence
- MNSVTDGDGLPTFICSICISKLINAYTFKQQCELIDSSFRLLIKKNEIKQEITSTDDLDYNEYSAARDTTEIKTEEDIPKVENDTIPNNKTSSSTTTHSCQICAKVYACEANLSRHMRQHFPSKRFRCKICNSTLTRMDHLKRHMIIHLKTKPHVCRTCKRGFNKADNLYSHESRCIGQRPNICPICNRGFMRADSLQVHMSSHEPSAECSLVLDSLDNIDKYIEIQDCFGPDEESTTQSEHDQNSQEHNLLEPQVNILEGNNCNQNNSIPDHSSGSSDDGGDDNYLLSTFTQDHNNDDDDDEDNDDDDDSKPLKPRNTNNQNNSNSGDTRHNEQQNNDLINTYTTLEDKTKHGTLDLPCDQCDKRFASLVNLEVHKQRHNRKENKNVFHCTQCDKKFTRADHLKRHMNSRHENYKPFKCRICAKTFTRRDHMVRHLKVHEIDPRTFTCDDCQKHFTREELLVKHRAAKHGVGEKMIPDKKFKCHICDKLFTTEKYRDTHISAHGNKTKVFRCKGCDQEFECKDDLAKHLKVANDCSRRFLCSECGQRFTKRDYLLVHIRRHRGEKPFKCRFCDKGFPRTTDLKAHEKCHTGEKNHLCIVCGKGFGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -