Nfla003971.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986040.1:84855260-84863728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.17 6.4 8.0 2.6 1 23 1073 1096 1073 1096 0.91 2 10 0.0018 0.066 14.2 0.1 1 23 1102 1125 1102 1125 0.94 3 10 4e-05 0.0015 19.4 0.3 3 23 1133 1153 1131 1153 0.97 4 10 7.5e-07 2.8e-05 24.9 2.2 1 23 1159 1181 1159 1181 0.98 5 10 6.4e-05 0.0024 18.8 0.6 1 23 1187 1209 1187 1209 0.96 6 10 0.00022 0.0083 17.1 1.6 1 23 1215 1237 1215 1237 0.98 7 10 1.3e-05 0.00047 21.0 0.5 1 23 1369 1391 1369 1391 0.97 8 10 5.5e-05 0.002 19.0 2.5 1 23 1397 1419 1397 1419 0.96 9 10 9.6e-05 0.0036 18.2 0.6 3 23 1427 1447 1425 1447 0.97 10 10 0.00012 0.0046 17.9 2.7 1 23 1453 1475 1453 1475 0.98
Sequence Information
- Coding Sequence
- atgacagCTAAAGGTGAATATAAATTATGTGGTGACAATTATGCAACAATTTGTCGATTATGTCTTGAAAGAAATGGATATATGCTCGCCATTTTCAATTCAGAAGAATTATCAAATCCCGATTTATCAATTATGGACGATACCGAAAAAAACTATtacaGGTCTTCAAACAGTTTACGAATTTGTAACGATCATTTTGAAAAACGTTTCATCAAGAAAAGTACACCACCTAAACGACTATTGGTCCGGGATGCTGTTCCTACTTTACTACCGCCTGATAGTATTTTGAAAATGCCCAAGAATATGCCAAAACCTCCTTTGCCAAATTCGACTGAATCTCCTTTGAGAAATTCATTTGTAAACATCAACAATGACGAAGTAATATTTGAACGTCCAGCGTtgaaagATGAATGCTCGCATAATGACAGAGGCATTAATTTTGAAGTACGTAAGGCTACTGATAATGAACCAgctataattaatattcaaacaaatagcTTTGTGAAAATTTCATTAAGAGacGAACCACAAACTGATAAATCAACGGGACCACGAAATCCAGACGCACTAATACAATTGATGGATAGTGAAGAACCTACTTTCAAAGCATCAGAAATGCTGTCAAACACTGTGGAGACAGCCTTACAAAATGACAGTGATATGCCCATATCGCTTACTAATTCTGAAGAACCAATATCTAATGCAGGATTAGAAGTGTTGCCATTTAATAACTGCGTGGGAACGTTTAACTTGAATATTTCGCCTGAGACTCCTGCGCAATGTAGTACACCTAAAAAGAATAATGAGTTTATACGAAAgcttaaacttttttcaaacaaaCCGCTGTGTCAAGTTAATGGATCACCTaagaatacaatatattctaaagtaaaaaaaattcaaatgttaaCACCTAAATCTTTAAGGCTGTACAAAGGAGCTAAAACAATAGGTCGCTTGCGAAGCCAAATTAACagaatgggaaaaaaattttctgtaaaaaaaaaaatgaagcaagacgttgaatcaataataaatgcgTCGTCAAACTACTTGGGTAAAAAAGCTTTAGTATTATTCGCAACTCAATTACGCTTATCTGCGACGAACAAATATGCAAAACGTTACAGtaatgaagtgaaagatattGCATTGTCTATAAAATATCACTCTCCCAGAACTTATAAGCTTTTAGCGAAATTTCTACATATACCAACTATAAGGACTTTGAATGAATACCAAAAAGATTTTCCTACCACTCCAGGTTTAAATTTTGCGGTTTTAAATCAACTGAAAGATTCGTTTGCCAAAAGCATTCCTGAAGATCGTCTTGTTAGTGTTTTATTCGACGAAATAAGTTTAGCCACTGAAGTTCACTACGATGCAGCTAAAGACATGTTCCACGGTTATGCTGATGATGGGGAAGAACGTAAGAATGAAATAGCGCATTGTGCATTAGTAGCAATGATAACTTGGATTAATAAACCAATGAAGCAAACAATTGGATACTGGTTTTTAGGCAAAAAAGGCAATTCATCGAAAACTCACAAAATAATGGTTAATACTATTAAATGCTTAAATGATACGGGTCTTATCGTCAAATGCTTAATTTGTGATCAAGGAACCAGAAATACTGGGCTGATAAAGAAGTACAAAATAACGAAAGATAAACCTTTCTTCGAGTTTGAAGTTGGTgacgaaaaacgcaaaatttatataatttttgatcctCCTCATTTAATTAAATCTTTTCGCAACAATCTATTCAACAAAAGATTCAAATACCGAGGTGGATACGTAGATTGGAAGCTTATTTACAAAGTTTATTTGTTGAGTAACCAAatgaacattaattttattccaaaaatcaaTGACCGTCATTTTGGAATGCAACAAAATGCAGCAAAAATGACTGTTTCACTGGCtactcaaattttttccaactCTATGTATTTAGCTTATCAAGCTTACAGGATGATAAAACCAAACGAATTTCCCGACAATGATACAACGGCAGAGTTTTTATTGGACAtggataaattatttgattctcTTAACTCAAATCTTCTTCAAccaacagtaaattcaaaattaaattttgctatAACCGAGACATCTGGacacattgaatttttaaatgaaatgctGCTACAATTTGCTAAtagtaaatttgaaaaaggaaatgataaacaaaaggCTATTCCACCGTGCATCACAGGAATGATCCTAACTATTAACAGTGTCTTAAAATTATCTGAAGAACTGAGAAAAGAGTATAATATGCCAGCATTGAAAACTAGGCGTCTGAATCAAGACCctcttgaaaatttatttgccGTTATTCGTCAACAAAATGGATGTTCAGTTAATCCTTCGACTAGATCATTTGAAACagctattaaacaaaattatatcacGCAATTAACGAAAGTTACAGAATCGGCTAACTGTCAAGATGACGAAAAcatgatttttgcaaaattgAGCAAGCTTAGTGCTGCAATCGCCAAGCCACAAAAAACTCAACAATCCTTACGAGAAGTTTTAATAGAAGCTTCAAATCCAGTCAAACAACTGGAGAAAGATATGTCACTGACAGAAACAGCTTCATTTACCCATGAAAatgcaatttattatatttgtgggTATTTAACCCGCAAATTTTTAAAGATTCacaaaaactgtcaaaaatgTGTAGATTTTCTAATACTACCTAAATCGGATAATAATTATCAAGAATACAAACTATTTACAATCATGAAAGATTATGCTGATAAGAATGGGCTTCAATATTCTACGGAAATGGTTGGTTTTGAAGATGGTCTTCCACCTAACATTTGCCATagatgtttatataaaatagaattatGTACTGATTTCAAGAAAGTTTGTTTACAATCTGATGCGGCCCTACGCCATAGTCTAAATCACAAATTAAGTGTAAAAGATGatacaaatataattgaaaacagGCATGTAGTAAGTTATTTACAATTCGAGGAATTCAATTtacaaaatcataaatttatagAACACGATGAGCATGTTGAAAATGTTATAACAGTTGTTGATCCAACTGTTGAATGTGATACAGACAATGAAGTAGAAGCTGAATCAACTACTAAAACAGAAACCGTTAATTTTGAAGTCGAAACACAACATCAAAGTGATGCTGAAAATGATATAACAACagaaattaatgaatttaaaaatgtctTTATGTGTCAATATTGCGATAGAGCTTTTATTAATCAAGATATGTGCTTTTTACATGAGAAATCAAATCATGATGTCTCTACTCCGTTTTTATGTCAAGAATGTGATATGGCATTTGGTGATCGTGTTAATTATACGGCACACTTAAAATCTGTCCATAAGAATGATAAACCATTTGGTTGTTCTGAATGTGGTCGAGCATTTGGTCGACGCAGTGATTTACGTAAGCATACGATTGTTCATACAGGTATTAAACCATTCACATGCACAATCTGCCTAAAATCGTTTTCAcgtaatacaaatttaaataagcaTTTACGTATACATAGTGGATTGAAACCACATGTATGTCCAAAATGTCCTAGAACATTCATATCAAAAGGTGATTTATCACGACATTCATTAATTCATTCCGGtatcaaaccattttcatgcAGTCAATGCGATCAATCATTTGGTCGGCGTGATAAATTAGTTCGACATGAAAAAAGACATTTGAAACCTGAAAATTTTGACAAGAGTGACATGTCACAAGATATAAGTTTTCTTAATGAACAATTAGTACAAAGACCATTCATTAGTGAATTTTCTGGAAATGgagatgaaaatattgaaacatCTGAAATAAAACAAGAATTTGATAGTGATCAATGGGATAGTTCTGAGAATATGGTGATAAGTCTCGATCCATACTCACATAATGATCAAATGGAAACTGAATCAAGTGGATACACACGGAGTGACACAAACTTAACTGTCATTGTAAAACCAACGGATAATACTGAAAGTACAGATCAAATAACCTTAGAGCATGTTACAGGTGATGATGGTTTTCCAGGATTTTCAGCCGAAGAAGTAACAATGGCAAAATCTGCTTTATTAAGACAATTTGTATGCACCGTATGTGGTAAGAAATTCTCAAGtagtgatttattaaaattgcattCTGCAACGCATAGTGCCTTGCGGCCACATGcttgtaaaatttgttcaaaagcaTTTATGCGAAAACGTGAATTAGATCGTCATATGAACACACATACTGGAATGAAACCATTTGGATGCTTAGTTTGTGAGAAAAAATTTGGTCGTAAAGATAAATTAGTACGACATATGAGAGTGCACGATGCCAATCGACATTATTCATGTACTTATTGTTCAGCGAAGTTTACCAGAAAGGATGGATTAGCTCATCATTTAAAGATGCATCTTATGAAAGATTTGGGATTGAATAGTGACAGTTTAGAACTGACTGCAACAAATGTTAATGAATCACAACCATCGACTACAAAGGATTCATAA
- Protein Sequence
- MTAKGEYKLCGDNYATICRLCLERNGYMLAIFNSEELSNPDLSIMDDTEKNYYRSSNSLRICNDHFEKRFIKKSTPPKRLLVRDAVPTLLPPDSILKMPKNMPKPPLPNSTESPLRNSFVNINNDEVIFERPALKDECSHNDRGINFEVRKATDNEPAIINIQTNSFVKISLRDEPQTDKSTGPRNPDALIQLMDSEEPTFKASEMLSNTVETALQNDSDMPISLTNSEEPISNAGLEVLPFNNCVGTFNLNISPETPAQCSTPKKNNEFIRKLKLFSNKPLCQVNGSPKNTIYSKVKKIQMLTPKSLRLYKGAKTIGRLRSQINRMGKKFSVKKKMKQDVESIINASSNYLGKKALVLFATQLRLSATNKYAKRYSNEVKDIALSIKYHSPRTYKLLAKFLHIPTIRTLNEYQKDFPTTPGLNFAVLNQLKDSFAKSIPEDRLVSVLFDEISLATEVHYDAAKDMFHGYADDGEERKNEIAHCALVAMITWINKPMKQTIGYWFLGKKGNSSKTHKIMVNTIKCLNDTGLIVKCLICDQGTRNTGLIKKYKITKDKPFFEFEVGDEKRKIYIIFDPPHLIKSFRNNLFNKRFKYRGGYVDWKLIYKVYLLSNQMNINFIPKINDRHFGMQQNAAKMTVSLATQIFSNSMYLAYQAYRMIKPNEFPDNDTTAEFLLDMDKLFDSLNSNLLQPTVNSKLNFAITETSGHIEFLNEMLLQFANSKFEKGNDKQKAIPPCITGMILTINSVLKLSEELRKEYNMPALKTRRLNQDPLENLFAVIRQQNGCSVNPSTRSFETAIKQNYITQLTKVTESANCQDDENMIFAKLSKLSAAIAKPQKTQQSLREVLIEASNPVKQLEKDMSLTETASFTHENAIYYICGYLTRKFLKIHKNCQKCVDFLILPKSDNNYQEYKLFTIMKDYADKNGLQYSTEMVGFEDGLPPNICHRCLYKIELCTDFKKVCLQSDAALRHSLNHKLSVKDDTNIIENRHVVSYLQFEEFNLQNHKFIEHDEHVENVITVVDPTVECDTDNEVEAESTTKTETVNFEVETQHQSDAENDITTEINEFKNVFMCQYCDRAFINQDMCFLHEKSNHDVSTPFLCQECDMAFGDRVNYTAHLKSVHKNDKPFGCSECGRAFGRRSDLRKHTIVHTGIKPFTCTICLKSFSRNTNLNKHLRIHSGLKPHVCPKCPRTFISKGDLSRHSLIHSGIKPFSCSQCDQSFGRRDKLVRHEKRHLKPENFDKSDMSQDISFLNEQLVQRPFISEFSGNGDENIETSEIKQEFDSDQWDSSENMVISLDPYSHNDQMETESSGYTRSDTNLTVIVKPTDNTESTDQITLEHVTGDDGFPGFSAEEVTMAKSALLRQFVCTVCGKKFSSSDLLKLHSATHSALRPHACKICSKAFMRKRELDRHMNTHTGMKPFGCLVCEKKFGRKDKLVRHMRVHDANRHYSCTYCSAKFTRKDGLAHHLKMHLMKDLGLNSDSLELTATNVNESQPSTTKDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -