Nfla001346.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986040.1:25976414-25981466[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0003 0.011 16.7 4.6 1 23 156 178 156 178 0.98 2 11 0.00058 0.021 15.8 8.1 1 23 184 206 184 206 0.95 3 11 1.4e-05 0.00053 20.8 5.7 1 23 212 234 212 234 0.99 4 11 0.00042 0.016 16.2 2.4 1 23 240 262 240 262 0.95 5 11 0.00021 0.0079 17.1 0.8 1 23 268 290 268 290 0.96 6 11 5.6e-05 0.0021 19.0 0.3 1 23 296 318 296 318 0.98 7 11 0.00018 0.0067 17.4 0.9 1 23 323 345 323 345 0.98 8 11 3.2e-05 0.0012 19.7 1.0 1 23 351 373 351 373 0.97 9 11 0.00076 0.028 15.4 0.4 2 23 380 401 379 401 0.96 10 11 0.00084 0.031 15.3 3.3 1 23 471 493 471 493 0.96 11 11 0.00031 0.012 16.6 5.3 1 23 503 525 503 525 0.97
Sequence Information
- Coding Sequence
- ATGTTAGGCACAGTTCGACAATTAACCGAAATGGGAACAGCGGCAAATGTAGCATCTACATTTAGCTATTGGCATACAGGTGATACACCGCGTTCAGATCCTGTTCTTGATATGCCCACACACTTAAATTATGCAGGTGCTTTACAAGATGTTGCAAAATTAAAATCAGTACGACGTCCTGTATTTTTGATGAATGATAAACAAACACATGACGTATTTGGTATTGCATgcgataaaaattgttcatgtgATGGAAATGATACATCCAAACATTTTATGACACCACTAGGTCCATTACAATTAACTGCAGAAGAATGTAATGAAATACTTATGAAACGTGCAGCTGCAGCTGCTACACAACAGCCAACGCTACAGATGGttcaaaatatacaaatcaCAGCACCCGAAGATCCACCAGATGTGAAACCTGTAATGAAAAATCAGAATCCAGCTAAAGAACGACCATACTCATGTCAAGAGTGTGGTAAATCATTCTTATTAAAACATCATTTAACCACACACTTACGTGTACATACAGGGGAACGTCCGCATGCTTGTCCACATTGTGGCAAAGCATTCGCACACAAACATTGCCTGAATACTCATTTATTGTTGCACAGTAGTGAGAGGCCCTTTCAATGTCCggaatgtaaaaaaagttttacattaAAACATCATTTGTTGACACATACACGAGTCCATACTCGCGATCGTCCATTTGTTTGCAATGAATGCGGAAGGACTTTCCCATTAAAAAGACATTTGGTGACGCATTCGAAGTTTCATGCTGGTGAAAGGCCATTTGTTTGTACTGTATGCGGTGAATCGTTTGCATTAAAAGATCATTTAGTAATGCATTCAAGATTCCATGGATCTTTAACGCCGTTCGTATGTCCCGACTGTGGGTCAACATTTCAACGTAAATTTGAATTGGTGAATCATGCACGATTACATGGAAAAAATCCACATCAATGTCCAGTTTGTAATAAAGAATTCTTACAAAAGCGTACTCTTGTTGCACATATACGtttacataatggcGACTCACCTTTCAATTGTCTACAATGTGGTGAATCATTTCGTGCAAAATCTGAATTAACACAACATACAAAAATGCACAATCCAGAGAAGCCACTAATATGCAGTGAGTGTGGTAGTTGTTTTAATTCACGTGAAGCATTAGCATTACATGTTCGTCTACATTCTGGTGATAAAGCATTGGTAAATGATTTATGTATGTTAACAGCTTCATTGCAACACACACAACAACAATTTCAAACCCAACAAACAAATGGTCCACCCACGTCCACAACCAACATTCAACATCAACAACAATCTGTTATAAATAACACTTCTGCATCAGCAACATCAGCATCCTCAGCAGcatcaaatttaaacaaaccaaaACCACACATATGTCCACATTGTGGTAAAGCTTTTGCAGCAAAACATGGCCTATTACAACATAACAAACGGCATCCAGATGGCGGATGTACAATACGTACCCATGTATGTGAAACATGTAACAAAGCGTTCTTCCAGAAAAATCATTTAATGTTACATCAACGACAACATACTGAGCAACATGCTCGAAATGTGTCTGCTGCGTCATCGGTGATTATATCGCAACAGGAGGCACAGAATCAACGaatgcaacaacaacaacagcagcagcaacaacaacagcaacatcATCATCAACAGCAACAGGTTTCATCGAATCAAGTACAGAATAATCCTCAGAGTTAG
- Protein Sequence
- MLGTVRQLTEMGTAANVASTFSYWHTGDTPRSDPVLDMPTHLNYAGALQDVAKLKSVRRPVFLMNDKQTHDVFGIACDKNCSCDGNDTSKHFMTPLGPLQLTAEECNEILMKRAAAAATQQPTLQMVQNIQITAPEDPPDVKPVMKNQNPAKERPYSCQECGKSFLLKHHLTTHLRVHTGERPHACPHCGKAFAHKHCLNTHLLLHSSERPFQCPECKKSFTLKHHLLTHTRVHTRDRPFVCNECGRTFPLKRHLVTHSKFHAGERPFVCTVCGESFALKDHLVMHSRFHGSLTPFVCPDCGSTFQRKFELVNHARLHGKNPHQCPVCNKEFLQKRTLVAHIRLHNGDSPFNCLQCGESFRAKSELTQHTKMHNPEKPLICSECGSCFNSREALALHVRLHSGDKALVNDLCMLTASLQHTQQQFQTQQTNGPPTSTTNIQHQQQSVINNTSASATSASSAASNLNKPKPHICPHCGKAFAAKHGLLQHNKRHPDGGCTIRTHVCETCNKAFFQKNHLMLHQRQHTEQHARNVSAASSVIISQQEAQNQRMQQQQQQQQQQQQHHHQQQQVSSNQVQNNPQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333177;
- 90% Identity
- iTF_00333177;
- 80% Identity
- -