Nfla016905.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986043.1:94152672-94154009[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00022 0.0084 17.1 0.8 1 23 47 69 47 69 0.97 2 11 1.7e-08 6.2e-07 30.1 2.4 1 23 75 97 75 97 0.98 3 11 0.042 1.6 9.9 0.4 2 23 107 128 106 128 0.94 4 11 5.1 1.9e+02 3.4 0.1 2 10 161 169 160 173 0.90 5 11 1.1e-05 0.00041 21.2 0.5 1 23 229 252 229 252 0.97 6 11 1.6e-06 6e-05 23.8 5.0 2 23 288 309 287 309 0.98 7 11 2.9e-06 0.00011 23.0 2.6 1 23 315 337 315 337 0.98 8 11 0.00063 0.023 15.7 2.3 1 20 340 359 340 361 0.94 9 11 3e-05 0.0011 19.8 2.6 1 23 365 387 365 387 0.98 10 11 0.00038 0.014 16.3 1.9 1 23 393 416 393 416 0.96 11 11 0.086 3.2 8.9 0.0 5 23 425 444 421 444 0.87
Sequence Information
- Coding Sequence
- ATGCTTTCACCAACAGAAAAAGTACCAgttgtaaaattaaatagtttggatgtggaaaattttttcaaaacatatcaATTAAAATCAGCCTCAAAACCGACTTTAGATTTATTGCAAGAATTGCCAAGAAAACGTAGTCATACATGTGCAGTTTGTGATCGTGAATTTAAAGGTGCTTCACATTTAGCCGAACATGAAAAAGtacatactggagaaaaaccatttacgTGCAATATATGTAACAAAACATTTGCACGTTCATCGAATTTAAAACGACATTTGACCACCCACAAATCGTCAAATACATTAAATTCACAAAAATGTCGATACTGTGACTATGCATTCGCGTCTAAAGTCATTTTAGATCGTCacgaaaaattacatttaaattttcgtgaatttattaaaattgacaaaGATTCCTTAAAACaggaaaaactttatgaaaatattagtaAACAAAGTGATCATGATAATGTGAAATGTAGTTTGTGTAACAAGGAATTTTTACGCAGTGAAATCCATGTTATAGGTAACGCTTATAAGTGCAAAGGATGTGCCAAAGAAATGATGAAACCAGGTAAAATTATTCGTcaagaatttgtatacatagtTGGAGATGCATCAGATTTTCAAAATGATTCCGAGGATGCACTTGAAGATGTTTATACGCCAGTCAAATCGTAcgaatgtgatatttgtgagGAATCATTTACAAGTAAAAATGGAttacaaaatcataaaaaaatatcacatgTAAAAGGACCGTCTAAAACAACCACGAAAACCCCACAAGTTAAATTGACACCAATTAAAATTccacaaattaaattaacaccAGTTAAATTACCACCGCCAAATAAATGTACACTGTGTAATCGAACCTTTACATCAAAATCCCACTTAACGGAACATCTTCGAACGCATTCAAATGAAAAACCATTTAAGTGTAGTTTATGTTCGCTATCATTTTCACGTAGCTATAATTTAAAAAGGCACGAGAAAATTCATGAAGTTTTTAAATGTACAGTATGTACGAAAATCTTTGCAAATAATGAAGAGTTTACAAAGCATAAAcataaagagaaaaaatataaGTGTGATAtgtgtgaaaaacaattttccaaaaaacgtTTATTGAAACAACATCAACTGTTACAtattggtattaaatttttcgaatgtaAATTGTGCGATAAACTATTTTCAcaggaaaaatatttagaatcacATCATAATTTAGCGCATGGTACACAAACACTAGCGTGTATTATCTGTGATGAAATGTTTACATCGGAAAACTCTTTAATGGAACATGTTAGTGCGGTGCATGTTTGA
- Protein Sequence
- MLSPTEKVPVVKLNSLDVENFFKTYQLKSASKPTLDLLQELPRKRSHTCAVCDREFKGASHLAEHEKVHTGEKPFTCNICNKTFARSSNLKRHLTTHKSSNTLNSQKCRYCDYAFASKVILDRHEKLHLNFREFIKIDKDSLKQEKLYENISKQSDHDNVKCSLCNKEFLRSEIHVIGNAYKCKGCAKEMMKPGKIIRQEFVYIVGDASDFQNDSEDALEDVYTPVKSYECDICEESFTSKNGLQNHKKISHVKGPSKTTTKTPQVKLTPIKIPQIKLTPVKLPPPNKCTLCNRTFTSKSHLTEHLRTHSNEKPFKCSLCSLSFSRSYNLKRHEKIHEVFKCTVCTKIFANNEEFTKHKHKEKKYKCDMCEKQFSKKRLLKQHQLLHIGIKFFECKLCDKLFSQEKYLESHHNLAHGTQTLACIICDEMFTSENSLMEHVSAVHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -