Nfla021302.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:27778085-27779294[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.6e-05 0.0014 19.6 0.4 3 23 68 89 67 89 0.95 2 10 0.00022 0.0083 17.1 4.2 3 23 97 117 95 117 0.96 3 10 5.9e-05 0.0022 18.9 2.4 2 23 120 141 119 141 0.96 4 10 0.00012 0.0046 17.9 4.0 1 23 148 171 148 171 0.97 5 10 0.2 7.3 7.8 1.1 3 23 181 199 179 199 0.78 6 10 1.1e-05 0.00039 21.2 0.4 1 23 207 230 207 230 0.94 7 10 1e-06 3.7e-05 24.5 1.7 3 23 243 263 241 263 0.95 8 10 1.3e-05 0.00047 21.0 1.9 1 23 269 291 269 291 0.96 9 10 1.5e-05 0.00057 20.7 0.7 1 23 297 319 297 319 0.98 10 10 0.00025 0.0092 16.9 0.8 1 23 325 348 325 348 0.96
Sequence Information
- Coding Sequence
- ATGATTTCACTTAAAATATTACACGAATACTTTGGATTGCAGTGTTTAAAGtcagaaaaacttttaaatgataTCTTAAGTAATGATATTCTTTCGAATGAGAACGATAAGGATAACGATTTAGCTCATCAAACCGATGAAATTGAATCAATACAATCAGAATTTTCAGAAAACCCAAtagtaaacgatattaaattgctatgtgatatttgtaattataCATTTCGACAACCTAAGCAGCTAGCAAAGCATCGTGCAATAAAACACAGTATTgatgattttataaattgtaaacaatgtaatcatgtttttcaaaatgaaaaacaattaaaaaaccaTATGAAACGACATGAAAAAACATGCCACGAGTGTGGTAAAAACTTTGAGAGTGCATttaaattaaatcgtcataaaaTTGTTCATCAACGAAAACGACAAACGTATTTTTGTCGATTTTGTACTAAATCATTTACACGAACAGATACCCTACAGGAACATATTAAACGGAAGCATAATGAGAAACCACGACCGAAACCGATTTGTAATATTTGTGGGAAATCGGTGTACAATGTTAATCATCATATGAAACAAAAACATACTTCGCAAACAGATCGACCATTTCCATGTAAATTATGCGATAAAGCGTTTGCATTTAAGTCTATGCTTCAAAAGCATGTAGAAAATGTTCACGATGATGGAAAAAAAGATAGTACATTCGATCATCTATGTAATGTATGTGGAAAACGATTTCGAACAAAAGGTGAATTAAAATCTCACATGGATATTCATTCAATTGAGCGTAAACATGCTTGTGCTGAATGTGGGAAGAAATACAAGACTCATAGTGCTCTATGGCGACATGAACGTATACATTCCGGTACAAAACCATTTGTTTGTACATATTGTTCAAAAGCTTTTACAACAAAAGTGATCCTTGTAAATCATATTCGTACAcatacaggagaaaaaccatttaaatGTACTATTTGTTTACGAGCCTTTTCCGTACTTTCAACCCTAACTACACATAAAAAACTTGTTCATGGAAATTAA
- Protein Sequence
- MISLKILHEYFGLQCLKSEKLLNDILSNDILSNENDKDNDLAHQTDEIESIQSEFSENPIVNDIKLLCDICNYTFRQPKQLAKHRAIKHSIDDFINCKQCNHVFQNEKQLKNHMKRHEKTCHECGKNFESAFKLNRHKIVHQRKRQTYFCRFCTKSFTRTDTLQEHIKRKHNEKPRPKPICNICGKSVYNVNHHMKQKHTSQTDRPFPCKLCDKAFAFKSMLQKHVENVHDDGKKDSTFDHLCNVCGKRFRTKGELKSHMDIHSIERKHACAECGKKYKTHSALWRHERIHSGTKPFVCTYCSKAFTTKVILVNHIRTHTGEKPFKCTICLRAFSVLSTLTTHKKLVHGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -