Nfla016277.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986043.1:74642114-74644916[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.4 2.4e+02 3.1 0.1 1 12 143 154 143 157 0.91 2 13 0.31 11 7.2 4.0 1 20 324 343 324 345 0.94 3 13 5.7e-05 0.0021 18.9 1.9 1 23 352 374 352 374 0.98 4 13 1.6e-05 0.00059 20.7 1.4 1 23 395 417 395 417 0.96 5 13 0.13 5 8.3 0.3 1 23 448 469 448 469 0.80 6 13 4.4e-05 0.0016 19.3 4.6 1 23 475 497 475 497 0.98 7 13 0.00018 0.0067 17.4 0.4 1 23 503 525 503 525 0.98 8 13 0.00017 0.0064 17.4 1.3 1 23 531 553 531 553 0.98 9 13 2e-06 7.4e-05 23.5 4.2 1 23 559 581 559 581 0.98 10 13 0.003 0.11 13.5 7.2 1 23 587 609 587 609 0.98 11 13 6.4e-05 0.0024 18.8 0.2 1 23 615 637 615 637 0.98 12 13 0.0002 0.0073 17.2 0.2 1 23 641 663 641 663 0.98 13 13 0.00072 0.027 15.5 0.2 1 23 671 694 671 694 0.96
Sequence Information
- Coding Sequence
- atgcagTTAGACTGTCCACTCTGTTGTGGCGAAAAATTTACATGCCAAGAATCGCTACGGTATCACTTATTGAGTATGACGGTCAATATTTATTGTCCATGTTGTAATCAATTATGTGATGGTATACCTCAATTAGTGGACCATTTAGGGTCATCACAATGTAATTCAAGTGCAGGTCCTGCAGTAGATAATGGCAAAGATTGTGAGATGACAGTGTTAAGTGTTAAAGAAGAAGACATGTCCGATACTTTTATGCTAGATAAAACAAATCAGGACGAAAGTCATGAAGATGATACGCAAAATATGGAGTTAATCAATGAAGCTTTAAATGTAAATACAGTCGTTTTGGAGGATGGTTCAATTATGGTGGAAAATCCTGAAGATGGTGTTGCTGAAATGGAATCTATGACGGAAAATGATGAAATCTATTCGTGTTCAAGTTGTGGTGTTAATTTTACATCGATTATGGAACATATTCAGCAGTATCATGATGGTCAGGAAGTTGTTGTTGAGatggCCGAAGTGAACGAACAATTCGAAGGACAAGGCGGCGATAacgttataataaaatcaaatatgggCATTGATGAAGTACTTAAATCGGACATGCTTCTATCGTCGAAATACTATGAGGACGAAGAAATTGATACAACCGAAGAAGATGATAGTGAAGAAATCAacgatgaaattaaatttccacaaattttaaatacactCAAGCAAGAAGAATGTGTTGACAAAGATGGTCGAGTTTATACGCGCAAAGTCGTTCAAATTGAGAAATTCTGGGATGATAGTGTGAAAACGATACCACCGAATAACAATAACAAGATGAAAGCTTCTAACGCCTTATTGAACTCCAATCGACGTCAACcaatttgtgatctgtttatagTGAATGCGGACGGCACTATGGAGAAGGCAACCACAAACGATAAAGGTTTAGACCTAAAAAATCTAGTGAAACTGTACAATTGTAGCCGATGTAAAATGCAATTCTccaaaattagccaatttaacaAACACACCTGCGATCCAGAACGAGCTAGTGATTATAAATGTTCCCGCTGTGAAGTGAGTTTCAACAATCCAAAATCTCTGTGTGCTCACATGAAAGCacataaaatcttaaaaattgaagattCCACAACTGCGGCCGGAATTTCTGGAGCAGTTGCTCCATTTCTATGCACCAAATGCGATACAGTTTTCCCGACAAACAAATCGCTACGGCTACATCAACGAATGCATGAACCAATTAAAGCGAAGGAGATCGAAGCTCCAGTTGAGTATGGAATCACGGGGCCAATTGAATTCGATCCGAATAAACCGCGTGAAATGTTTGTATGTACGGTGTGCAATAAATCGTACGATAAAGGCTACGAATTAATTCACATGGCGACGCATAGCGGTGAAGATGATTACCATTGTGATATATGTAATCGGAAATTTTTCACCCATGAAAATCTCGAAATGCATATGCGAGTCCATAACGGGGGGAAACCGTTTAGCTGTTCGTAttgtaaaaattcatttgatacAGCTCAAGCCCTCACCGATCATATGGAAGTGCATACAAAAGATCGACCATATTCGTGTGGCTATTGTGGCAGAAAATTCGCTCGACCTCATGAAAAAGTTAAGCATGAACGTATACACACCGGGGAGAAACCACATGAATGTGAGatttgtggtaaaacatttCGTGTTAGTTATTGTTTAACCCTGCATATGCGTACACACACGGGGGCTCGGCCCTATGTGTGCAAACATTGTGGGAAACGATTTAAAGCACACAGTGTCTATAACCATCATCTGTTAACGCACTCGGATCAACGTAACTACAAGTGTCCGTATTGTCCGAAAGCATTTAAAACGGGGGTCCAATTAGCCGGCCATAAAAATAGTCATACCAAACCGTTCAGTTGTACCGAGTGCAATCGACCGTTTGCATCTCTGTACGCGGTTCGATCGCACATGGAGAGTCATAAACGGGAGAATAATTTAAAGTTTAGTTGTTATCAATGTGGCGCATCGTATGCTCGAAATTTCGCACTGCGAGATCACATTAAGGAGGTGCATAGTTCAACAGTGTCGGTGACAGGCGGCGCTAGTGACTTGCAGGATACGGATACAATTGTTATTGGCAGTGATAAAGTGAAAATTGAGGAACTCGAACATTTTAAAGCGTCCAATTCGATATTAACAGATGAGACTATTTTACCGGACGATAATGATGATGAAACTGAGATGGCCTTAAGTCAATTGCAGCAAGAGACTACTGATGATGAATTATAA
- Protein Sequence
- MQLDCPLCCGEKFTCQESLRYHLLSMTVNIYCPCCNQLCDGIPQLVDHLGSSQCNSSAGPAVDNGKDCEMTVLSVKEEDMSDTFMLDKTNQDESHEDDTQNMELINEALNVNTVVLEDGSIMVENPEDGVAEMESMTENDEIYSCSSCGVNFTSIMEHIQQYHDGQEVVVEMAEVNEQFEGQGGDNVIIKSNMGIDEVLKSDMLLSSKYYEDEEIDTTEEDDSEEINDEIKFPQILNTLKQEECVDKDGRVYTRKVVQIEKFWDDSVKTIPPNNNNKMKASNALLNSNRRQPICDLFIVNADGTMEKATTNDKGLDLKNLVKLYNCSRCKMQFSKISQFNKHTCDPERASDYKCSRCEVSFNNPKSLCAHMKAHKILKIEDSTTAAGISGAVAPFLCTKCDTVFPTNKSLRLHQRMHEPIKAKEIEAPVEYGITGPIEFDPNKPREMFVCTVCNKSYDKGYELIHMATHSGEDDYHCDICNRKFFTHENLEMHMRVHNGGKPFSCSYCKNSFDTAQALTDHMEVHTKDRPYSCGYCGRKFARPHEKVKHERIHTGEKPHECEICGKTFRVSYCLTLHMRTHTGARPYVCKHCGKRFKAHSVYNHHLLTHSDQRNYKCPYCPKAFKTGVQLAGHKNSHTKPFSCTECNRPFASLYAVRSHMESHKRENNLKFSCYQCGASYARNFALRDHIKEVHSSTVSVTGGASDLQDTDTIVIGSDKVKIEELEHFKASNSILTDETILPDDNDDETEMALSQLQQETTDDEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333115;
- 90% Identity
- -
- 80% Identity
- -