Nfla022327.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:62970614-62972143[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.6e-05 0.00096 20.0 0.9 2 23 170 191 169 191 0.97 2 11 1.2e-05 0.00043 21.1 4.0 1 23 199 221 199 221 0.98 3 11 0.0008 0.03 15.3 0.5 1 23 227 250 227 250 0.97 4 11 0.51 19 6.5 3.0 2 23 256 277 255 277 0.96 5 11 1.9e-05 0.00072 20.4 1.4 1 23 282 304 282 304 0.98 6 11 3.6e-06 0.00013 22.7 0.8 1 23 310 333 310 333 0.96 7 11 0.001 0.038 15.0 0.2 2 23 367 389 366 389 0.94 8 11 3.6e-05 0.0014 19.6 0.3 1 23 398 421 398 421 0.98 9 11 8e-05 0.003 18.5 1.7 2 23 428 450 428 450 0.96 10 11 6.7e-05 0.0025 18.7 5.6 1 23 456 478 456 478 0.98 11 11 1.9e-05 0.00071 20.4 0.2 1 23 484 506 484 506 0.98
Sequence Information
- Coding Sequence
- ATGCCTCAACAATTATGTGACAATTGTTTTTGGCAATTAAAAAATGCCTACGATTTTCGACAACAATGTGTGGTATCCAtggaaattttatgtgaaatattaCGTGAAAATGAGAATTCCGATGATaaacattcaatttatttagaagaagataaattaaaaactgaagTTAATATGAAAAGTGTTACGGCTAATAATTCAGAAGATGATGTTGAAGTGAAAAGCGAACTGGGCTTCGATGAAGTGTTTTCCCAAGTTGAAACACTCCTAGATGATAGTAAACAATCAGATGAAAATACAAAGTTATCAAAACGCTGTAACAATCCGAAAATTGAAATCAGTGAAGATGAAAATGGTGAATCATCTTCATGTTCTAGCGATGAATATCAAGATGACggtgataatgatgatgatttaGGCTCAGATAATGAAACAACTGAAGGTAATGAACAAAAACAACGATCTTTAGCGGAtatcttaataaaaaagtacaaaatttacGATCTAACATGTAATATTTGCAAAAAGGAGATAAGTACTCGATCAACGTTACTCCGACACATGGAAACACATGACACAAATCGTCCATTAAAATATCACTGTAGTATATGTAAAAAAGGATTTTACACAAGTGAAAATCTAAAGAAACATGTAAATCGTCACATGGGAAAAACCAAATTCTCCTGTGATAAATGTCCGAAACGTTTTTACGTACTAAGTGCACTTGGAGTCCATTATAAGTCGAGTCATAAAGCGGAACCGATACAATGCTGCAAATGTCCATCACAATTTTATCATCCCCTCCAATTAGAACAACACGAACAAAATCATggtgaaaaaaaatatgtttgcgATGTATGTGGAAAAgtttttccgaaaaaaaatcGTCTTACCaaacataaaaaataccattcagaAGAACGTCCATTTACTTGCAATATCTGTGATCGTGGCTTTAAGACTAAGGCGGATTTAACGTCACACGTTAAATTACGTCATGTGGAAAGTGATCGTCGTGAAGTGTGTTATATCTGTGGGAAGTTAATACCCGTAGGAACTCTAACGATACATCTGGATACGCATAAAGATCGTAGTGTGAAGTGTCCAGAATGTGATAAAGTATTTGCTAGCAAAATCATTTTAGATCGTCATATCAATCATATTCATCGAAATGGTGGTATTAGTCAAAAGTATTATTGCGATATTTGTAATAAAGCGCTAGGAAGTAAGGGTAGTCTTAAGACACATATGATTACGACTCACTCGGATGATAAGAAAAACGAATGCCATATTTGTGGCAAAACATATAAATTGCTGTCACATGTGCGCGCGCATATTCAAAGTGCACATATGGATGTCAGACCGCATACGTGTTCGATCTGTAGTAAAGCTTTTCATACGAAACTACTGCTAAAGAATCATATGCGGACACATACTGGGGAACGACCTTTCCCATGTTCGATTTGTGGAAAAGCGTTtggatttaaaaatgttttgaacactCATATGAAAGTACATTCGAAATCCTAA
- Protein Sequence
- MPQQLCDNCFWQLKNAYDFRQQCVVSMEILCEILRENENSDDKHSIYLEEDKLKTEVNMKSVTANNSEDDVEVKSELGFDEVFSQVETLLDDSKQSDENTKLSKRCNNPKIEISEDENGESSSCSSDEYQDDGDNDDDLGSDNETTEGNEQKQRSLADILIKKYKIYDLTCNICKKEISTRSTLLRHMETHDTNRPLKYHCSICKKGFYTSENLKKHVNRHMGKTKFSCDKCPKRFYVLSALGVHYKSSHKAEPIQCCKCPSQFYHPLQLEQHEQNHGEKKYVCDVCGKVFPKKNRLTKHKKYHSEERPFTCNICDRGFKTKADLTSHVKLRHVESDRREVCYICGKLIPVGTLTIHLDTHKDRSVKCPECDKVFASKIILDRHINHIHRNGGISQKYYCDICNKALGSKGSLKTHMITTHSDDKKNECHICGKTYKLLSHVRAHIQSAHMDVRPHTCSICSKAFHTKLLLKNHMRTHTGERPFPCSICGKAFGFKNVLNTHMKVHSKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00333120;
- 90% Identity
- iTF_00333120;
- 80% Identity
- -