Nfla021051.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:18404703-18406709[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.4e-06 5.4e-05 24.0 0.7 3 23 234 254 232 254 0.97 2 15 0.00078 0.029 15.4 2.6 1 23 261 283 261 283 0.96 3 15 0.032 1.2 10.3 1.4 1 23 289 312 289 312 0.97 4 15 0.0098 0.36 11.9 0.8 2 23 318 340 317 340 0.92 5 15 0.00082 0.03 15.3 0.6 1 23 347 369 347 369 0.97 6 15 2.7e-06 0.0001 23.1 1.1 1 23 375 398 375 398 0.96 7 15 0.012 0.46 11.6 1.0 2 23 406 428 405 428 0.90 8 15 0.036 1.3 10.1 0.8 1 23 435 457 435 457 0.95 9 15 0.0001 0.0038 18.2 4.8 1 23 463 486 463 486 0.96 10 15 3.4 1.3e+02 3.9 0.3 2 17 497 509 497 515 0.68 11 15 0.0035 0.13 13.3 1.3 1 23 521 544 521 544 0.97 12 15 0.00042 0.015 16.2 0.2 1 20 553 572 553 573 0.96 13 15 0.024 0.88 10.7 2.9 3 23 584 605 582 605 0.97 14 15 0.00019 0.0071 17.3 6.7 1 23 611 633 611 633 0.98 15 15 0.00014 0.0054 17.7 1.2 1 23 639 662 639 662 0.97
Sequence Information
- Coding Sequence
- atgaatttattaagtATAGACGATTTTAACGTAATATGTGGAATATGTTTAATGCCAGAtgaaaatttggcatatttaACGAATGAAGACTATTATATGTTAGAAATATGTACTTCAGAAATATTCCAAACAGATAAATTTCCACAACAAATATGTACAGAGTGTTCAACACAATTACAGAATTcgtataatttcaaacaaaaatatgtattatctgtgaaaatattgaacgatatactttcaaaaaacgatgaattgaatgaaattagtttaaaaactaatttgaatACATATTTAGATTCGGAAAGTAATTTGgatagaaatttaataaaacatgaaGATGATTCTGAACAAACTGAAATTATTTCCGTGATAAAAGATACGGATGATTATGTTAATTTTGATGATACCAAATCTGCTTTCTTCTATATTGTAGACGATGATAATTCGTCTCATACCAATGAGGAAGAGTATTTAGATTCAAAAAGTAACTcagatgaaaatttaatagaacagaaaattgAGATTATAGATGATTACGTTGATGTTGATGATAAACAATGCGGCATTGACAATATTGAAGGCGATAAAAATTTATGTCATAATGGCGAGAATGAATCGAATGAAGAGCATATTGCATTAGCAAaatcaatgattgaattattaTCAACTTCATCATATAAATTACTcgatataatttgtaatatatgtaaTCGAAAATTCTCTACACGTTCAGGGCTACTCAAACATATTAATACACATGTTAATATAGAATATTCACATTTTTGTACACTCTGTGATCAAGGATTTTATAGTACAGACAGTTTAAATCGACACATATCACGACATTCTGTAGGGCGAAAATATCATTGTGAATTATGCTCTAAAGAATTTTTACAATTGCGTGCATTTGCGAAACATCAGCGCATTGTCCATGATTCTAAACCGGTTGAATGTActaaatgttcaaaaaaattttcacatccGTTACTGGTAGAACGTCACGAACAAGAAGCTCACAAATGTAATGAAAAGGAATATACATGTGATGATTGTGGTGAAAAATTTTGGGATAATTCAAGTTTTGAACAACATCGTGTGAAACATTCTAAGGAACGGCCATTCGCTTGCTCGAATTGTGATAGAACTTATAAACGGTTATACTCATTAAAAAAGCACATCCGTATTGCCCATAAAAATGTTGAAAGGCATCTTAACTGtactaaatgtttaaaaaaatttgtccatCCATTACAACTCGAACGTCACGAAGAATATGCTCACAAACTTAAAGAAAACGGACATATATGTGATGTATGTGGTGAGAAATTTTTAGATTATTCAAGATTAGAACAGCATCAAGTGAAACATACAGATTTACGACCATTTAATTGCACGTAttgtcataaaaattataaaaggcaaaatacattaaataaacatGTTCGTTTGGTACATGCAAATCAGGAAATTCAAAAGAAACTTGAAGTGTGTTTCATTTGTGGTAAATCTGTGAGAAAATTAAATGTACATTTAGATTCACATACGCAAACACGTACCCATAAATGTCCGatatgtttaaaaatgtataaaactaaAGCGATTTTACAGGAACACTTAAAAGTTCGACATCCATCGGATGGTATTGAAAGGAAATATCattgtaaaatatgtaataaagcGTTAGCTGAGCGAAGTAATTTAGCAAAACATATGGCATGTGTACATACAACTGTTAAGCGTTATGGATGTCCACACtgtgataataaatataaattaaaacaacatGTTAATCAACATATTCGAAGTGTACATATGGATGAACGATCTCATACGTGTACCATTTGTAAAAAGGGATTTTTCAAAaagtattctttaaaaaaacatatgttCACGCATACGCGTAAACGACCGcatgtttgtaataaatgtgatgAAACATTTGTTCGTGGTATTGATTTATTTACACATATGAAGAAGGTTCACTCAAGTGATTTAGATACATAG
- Protein Sequence
- MNLLSIDDFNVICGICLMPDENLAYLTNEDYYMLEICTSEIFQTDKFPQQICTECSTQLQNSYNFKQKYVLSVKILNDILSKNDELNEISLKTNLNTYLDSESNLDRNLIKHEDDSEQTEIISVIKDTDDYVNFDDTKSAFFYIVDDDNSSHTNEEEYLDSKSNSDENLIEQKIEIIDDYVDVDDKQCGIDNIEGDKNLCHNGENESNEEHIALAKSMIELLSTSSYKLLDIICNICNRKFSTRSGLLKHINTHVNIEYSHFCTLCDQGFYSTDSLNRHISRHSVGRKYHCELCSKEFLQLRAFAKHQRIVHDSKPVECTKCSKKFSHPLLVERHEQEAHKCNEKEYTCDDCGEKFWDNSSFEQHRVKHSKERPFACSNCDRTYKRLYSLKKHIRIAHKNVERHLNCTKCLKKFVHPLQLERHEEYAHKLKENGHICDVCGEKFLDYSRLEQHQVKHTDLRPFNCTYCHKNYKRQNTLNKHVRLVHANQEIQKKLEVCFICGKSVRKLNVHLDSHTQTRTHKCPICLKMYKTKAILQEHLKVRHPSDGIERKYHCKICNKALAERSNLAKHMACVHTTVKRYGCPHCDNKYKLKQHVNQHIRSVHMDERSHTCTICKKGFFKKYSLKKHMFTHTRKRPHVCNKCDETFVRGIDLFTHMKKVHSSDLDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -