Nfla022326.1
Basic Information
- Insect
- Nineta flava
- Gene Symbol
- -
- Assembly
- GCA_963920215.1
- Location
- OY986045.1:62967365-62969333[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.8e-05 0.0025 18.7 0.3 2 23 185 206 184 206 0.96 2 12 5.2e-06 0.00019 22.2 1.9 1 23 214 236 214 236 0.98 3 12 0.0023 0.086 13.9 0.6 1 23 242 265 242 265 0.97 4 12 0.017 0.63 11.2 1.5 2 23 271 293 270 293 0.95 5 12 1.6e-06 5.8e-05 23.8 0.8 1 23 298 320 298 320 0.98 6 12 1.9e-05 0.00071 20.4 4.0 1 23 326 349 326 349 0.96 7 12 0.92 34 5.7 0.2 3 23 358 377 357 377 0.92 8 12 2.5e-05 0.00091 20.1 0.3 1 23 383 406 383 406 0.96 9 12 0.00031 0.011 16.6 0.6 3 23 419 440 417 440 0.94 10 12 0.00034 0.013 16.5 1.3 2 23 447 469 447 469 0.96 11 12 9.9e-05 0.0037 18.2 6.0 1 23 475 497 475 497 0.97 12 12 2.5e-05 0.00093 20.1 0.5 1 23 503 525 503 525 0.98
Sequence Information
- Coding Sequence
- ATGAATCAATCCATTAATTATCAAGATTTTAATACAATATGTCGTATTTGTTTAGTTCAAAGAGAAAATATGACATCAATAGAGGAATCACAAATTATTCAAATGTTAGAGGAATGTACTTCAGTCGATgaACAGtcatatgaaaaaaaactacCACAGCAAATATGTACCCCCTGTTTTTGGCAATTAAAAAATGCGCATGGATTCAAACAACAATGTTTGCTTTCTCTAGAAATTCTTTTCGAAGTGGTGGTTTTACATGAAAATAATACCAATTTagaacaagaaaataaaaatatttcaatagatgttaaaaatgaatgCGAAAACGTTGAAAAAATTGACAGCCATATTGAAACAGATCAAAATGATGCCACACAAAATTTACACCTCGATGAATTCGACGATGATAATTCAATTGTACAAGATGATATCAAAATCAGTGATGACGATGACTCATCACAGGAAGAGAAAAAAGGCGAGAATATCATAGAAAATGGACAAAAATCGTTAGCCGATATTTTacgtaaaaagtataatatttacgatttaaccTGTAACATATGTAACAAAGAATTAAGTACAAGAGCAACCTTATTACGTCATATGGATATCCACAATACAAATCGATCCTTAAACTACCAATGTAACATATGTAACAAACGATTTTATGCACAAGAGAATTTGCGTAAACATGAAAATCGGCATATGGGTAAAACAAAGTATCAATGTGATCGATGTCCAAAAAAATTCTACGTTCTAAGTGCATTAGGTGTTCACAATAAAACACGACACAAAGCAACCCCAATTAAATGTTCACAATGTCAGGTTAAATTTTATCATCAATTACAGTTAGAACAGCATGAACAAAGTGCGCATGCTAAGAAAGAATACGTATGTGATACGTGCGGTAAAGTATTcaccttaaaatattatttgcgtGAGCATCAAATAACGCATTCAAATGCACGTCATCACACTTGTGAATACTGTAAAAAAGGATTTAAACATAAAGGCACATTACGAGCGCATATTAAACTGGTTCACATTGAACCGGAACGTCGTGAAATGTGTAACGTATGcggtaaattaattttaccatcAACATTACGCTCACATTTAGAATCACATGACAAAGAAACAGTATATAAGTGTCCCGATTGTGgcaaaatttataatagtaaatatgTGTTACGTGGACATATCAATGAAAAACATAATCCGGAAACAGCATCCGTTAATGCGGCTATCAtttgtaaaatatgtaataaaaatttaacaagtaAGCGAACGTTAAAAACCCATATGGTGGTTATGCATTCGGAGATGAAAAAACGGGAATGTCATATTTGTGGTAAAGCATATAAGTTACAGTGTAATGTGAATGCGCACATTCAGAGTGCGCATATGGATGTTAGACCGCATATTTGTAGTACATGTAGTAAAGCTTTTCATACAAAAACATTGTTACGAAATCATATGCGTACACATACGGGAGAACGGCCATTTTCTTGTACCGTATGCGGGAAATCGTTTGGCTTTAAGGGTGTGCTTAGTACACACATGAAAGTTCATGCAAAGTAA
- Protein Sequence
- MNQSINYQDFNTICRICLVQRENMTSIEESQIIQMLEECTSVDEQSYEKKLPQQICTPCFWQLKNAHGFKQQCLLSLEILFEVVVLHENNTNLEQENKNISIDVKNECENVEKIDSHIETDQNDATQNLHLDEFDDDNSIVQDDIKISDDDDSSQEEKKGENIIENGQKSLADILRKKYNIYDLTCNICNKELSTRATLLRHMDIHNTNRSLNYQCNICNKRFYAQENLRKHENRHMGKTKYQCDRCPKKFYVLSALGVHNKTRHKATPIKCSQCQVKFYHQLQLEQHEQSAHAKKEYVCDTCGKVFTLKYYLREHQITHSNARHHTCEYCKKGFKHKGTLRAHIKLVHIEPERREMCNVCGKLILPSTLRSHLESHDKETVYKCPDCGKIYNSKYVLRGHINEKHNPETASVNAAIICKICNKNLTSKRTLKTHMVVMHSEMKKRECHICGKAYKLQCNVNAHIQSAHMDVRPHICSTCSKAFHTKTLLRNHMRTHTGERPFSCTVCGKSFGFKGVLSTHMKVHAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00332988;
- 90% Identity
- -
- 80% Identity
- -